Myxocyprinus asiaticus (Chinese sucker): 127442424
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Entry
127442424 CDS
T08782
Name
(RefSeq) 5'-3' exoribonuclease 1-like isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi03008
Ribosome biogenesis in eukaryotes
masi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
127442424
09123 Folding, sorting and degradation
03018 RNA degradation
127442424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
masi03019
]
127442424
03009 Ribosome biogenesis [BR:
masi03009
]
127442424
03016 Transfer RNA biogenesis [BR:
masi03016
]
127442424
03036 Chromosome and associated proteins [BR:
masi03036
]
127442424
Messenger RNA biogenesis [BR:
masi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127442424
mRNA degradation factors
5'-3' decay
5' exonucleases
127442424
Ribosome biogenesis [BR:
masi03009
]
Eukaryotic type
Pre-60S particles
RNases
127442424
Transfer RNA biogenesis [BR:
masi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
127442424
Chromosome and associated proteins [BR:
masi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127442424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
127442424
NCBI-ProteinID:
XP_051556405
LinkDB
All DBs
Position
6:complement(21314340..21356604)
Genome browser
AA seq
1705 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALEKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHYKLSTDKTWQGVNVYLSGHETPGEGEHK
IMEFIRSESAKPGHNPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKSQKRIS
APEETTFHLLHLSLMREYIDYEFSELRKKISFEYDLERIIDDWVLMGFLVGNDFIPHLPH
LHINHDALPLLYRTYISVLPTIGGYLNENGHLNLAHFEKYLEKLSDFDRDHFNEVFVDLK
WFESKVGNKYLNEAAGLAAEEADIKDMKKSKASDGSLCLAALDGVKDSNSTPGRAPEGTD
EDGEDDDMFETEFRQYKRTYYMTKMGVEVVSDEFLANQAKCYVEGIQWILHYYYHGVQSW
SWYYPYHYAPFLSDVRNISSLTLTFELAKPFLPFEQLLGVLPAASKDLLPQCYQHLMTSP
SSPIVEYYPQDFRTDLNGKQQEWEAVVLIPFIDEKCLLAAMEPYAHQMTPSEKARNRHTE
CAVYCFDKELDYAYNSPLPQILSDIIHCHVRQTPIPMDAWRVSLDHVGRRVDRGALYFSG
FPTLQHIQHKFYKKKSGVMVFQQSSRGESMILEILDSQEMEQVDNVAALVLGKPVFVNWP
HLMEARVVAVSDGEIKYSLEEPSGSQMLYLGNTSPPAKVTNLTDKEQKEWVKEVQGLTEH
FGKRKGIVISETDVVVYAQLLTGRKYVIGQNGKVLLEKQFAKQVLPYPYQTIVKDIKAFD
SSMAHFKTLEELFPPGISVFMVGNPYYGAIGDVQDSSDVISEGRVRVVFSIPCDPQLDAL
IQNQHKYSVKYSPGYVLASRLGITSYLVSRFSGSIFIGRGSKKNPHGEQKVNVGLNLKFN
KKNEEVPGYTKRTEKEWLYSAAVEELLSEYLERFSEVFDFVARNSHDDFLYEDDIWPGED
ENGAEKIQEIQTWLKTNPVSSSSRSSCDLQILDTGIVEKIEEELEKTKAKKMNKKVRVTV
KPYLLFRPLEQQHGVVPDPEAEYNLFDRVVNVRESFSVPLGLRGTVIGIKGAEREAEVLY
EVLFDEEFAGGLTIRCSPGRGYRLPPSALINLSHGSRKEKGSHKLTAVVKPQPSSSHPAH
KSQLGGLNHSPRSPFIPTQQQNGQQSFNLRADTQGNRHSPHKALNQKNQHKDSSTEMEFS
NVWQSLQSSGIPQKPPAHWQNNAWKSSGSEPQQRQLEVQNKQSQGNDSSNKPAAGGNIRL
LKRNDNLNAALLQGPSDKVSTEFEELIANLMISKEPEPTQYHPPKDPKSQSGEPLSPHSF
AMKGTLVLKEMLKIDNSATSSSAPDSTSFSGGQNSETPTTQQQQQSKRRSSKKLAARINT
PQNEAPALPLSGQPPILPSIAAELGRVCMNLGMGPPEFAFLHNRQSLTVCQVKLSNGLLV
HGPQCHSETEAKEKAVLFALQRLNSLGSFPLPPSIFPAVQQMRPLAPHPTMFSQPPGGLL
MPPQGFGPLHWGMQLPHQGQPFYGGTFPGAWPPASTSAGGSHNQFVPLQVTKKRVSGQSR
NQEAKQLSTSTANAGQIEGSGPSQPASVPPSDHKTHTHTHEPAEKPTPTTPKTPRQKTNT
HTPGSASKRKHRKLAVNFEAAKVTD
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccgaaattttaccggtggatatcagagcgctatccgtgtctgagtgaagtt
gtcaaagagcatcagatcccagagtttgacaacctttatttagatatgaacggaatcatc
caccaatgttcccaccctaatgatgaggacgtacacttccgtatttctgaggagaagatt
ttcgctgacattttccactacctggaggtgctcttccgcattatcaagcccaggaaagtc
ttttttatggcggtggatggagttgcacccagggccaagatgaaccagcagcgtgggaga
agattcaggtcagcaaaagaagccgaggagaaaatcaagaaggctttggagaaaggcgaa
gttttacccacagaggccagatttgactctaactgcatcacgcctggaacggatttcatg
gccaggctacaagagcagcttaaatattttgttcactataagctgtccacagacaaaaca
tggcagggagtaaatgtgtatttgtctggtcatgagacccctggtgaaggagagcacaag
ataatggagttcattcgctctgagagcgccaagccgggtcataacccaaacacaagacac
tgcctttacggtctggatgctgacctgataatgcttggcttgaccagccatgagcctaat
ttttctctcctcagagaggaggtacgcttcggaggcaaaaagtcacaaaagaggatatca
gctcctgaggagacgacctttcacctgctccacctctcgcttatgagggaatacattgac
tatgagttttcagagctcaggaaaaagatctcatttgagtatgacctggagcggatcata
gatgactgggttctgatgggtttcctggtggggaatgacttcatccctcatcttcctcac
ctgcacatcaatcatgatgcactgccgctgctctaccgaacttacatcagtgtgctgccc
actatcgggggctacctgaatgaaaacggtcacctcaaccttgcccactttgagaagtac
ttggagaagctctcggattttgaccgtgatcacttcaacgaggtgtttgtggatctgaag
tggtttgagagtaaggtggggaacaaatacctgaacgaggcagctgggctggcagccgag
gaggctgatatcaaagacatgaagaagagtaaggcttcagacggctccctctgtcttgct
gcacttgatggagtcaaggactctaacagcactccaggaagagcaccagaaggaacagat
gaggacggtgaggatgatgatatgtttgaaacagagtttcgacaatataagcgcacctat
tacatgaccaaaatgggtgttgaagtcgtttcagatgaatttttggccaatcaggctaaa
tgttatgtggaagggatccagtggatcttacactactactaccatggagttcagtcctgg
agctggtattacccgtaccactatgctcccttcctatctgatgtgagaaacatttctagt
ctcactttgacctttgagctggccaaacccttcttgccattcgagcagctcttgggtgtc
ctgcctgcagccagcaaagacctacttccacagtgttaccagcacctaatgacatcacca
agctcacccattgttgagtattacccacaagactttagaacagacctgaacggcaaacag
caagagtgggaagctgtggtgctcatcccgtttattgatgagaaatgcttgttagctgca
atggagccctacgcccatcaaatgaccccgtcagagaaagccaggaacagacataccgag
tgtgctgtctactgctttgataaagagctggactatgcctacaactcgccattaccccaa
atcctttccgacatcatccactgccatgtcaggcaaacgccaatcccgatggatgcatgg
cgtgtgtcactggatcacgtagggcgcagggttgaccgaggagctctttacttcagtggc
ttccccaccttacaacacatccagcataaattttataagaagaaaagtggggtgatggtg
tttcaacaaagcagcagaggagagagcatgatactggagattttagacagccaagagatg
gaacaggtagataatgttgcagcactggttctcggaaagcctgtgtttgtgaactggccc
catctaatggaagctcgagtagtagctgtttcagatggagaaattaagtattctttagag
gaaccctcaggatcacagatgctgtatttggggaacacttctccccctgctaaagtgacc
aatctgactgataaagagcagaaggagtgggttaaagaggtgcaaggcctcacagagcac
ttcggcaagcgtaaaggcattgtgatcagtgagacggatgtggtagtatacgcccagctg
ctgacaggcaggaagtatgtcatcggtcagaacggaaaggtccttttggagaagcagttt
gccaaacaggtcctgccctatccataccagaccattgtgaaggatatcaaagcctttgac
tcttcaatggcacacttcaagacattggaggagcttttccccccaggaatctcagtattt
atggttggaaacccatattatggtgcaataggagatgtgcaagactctagtgatgtcatc
agtgagggacgagtcagagtggtcttctctataccatgtgatcctcaacttgatgcctta
atacagaaccagcataaatactctgtgaagtacagtcccgggtatgtgcttgcctcccgc
ctcggaatcactagctacctcgtctcaaggttctccggtagcatcttcattggaagagga
tccaagaagaatcctcatggagagcagaaagtgaatgtgggccttaatctcaagttcaac
aagaagaatgaggaagttcctggatacaccaagagaacagaaaaggagtggctctactct
gctgctgtagaggaactgttatctgaatacttagaaagattttcagaagtgtttgacttt
gtagcgagaaatagtcacgatgacttcctttatgaagatgacatctggccaggagaggat
gagaatggggctgagaagatccaggagatccagacctggcttaaaactaaccccgtcagc
tcttcctcccgatcgtcatgtgaccttcagatcctggacactggcattgtggagaagatt
gaggaggagctggagaaaaccaaggcaaagaagatgaacaagaaagtgcgtgtcactgtg
aagccttacctgctcttcaggccgctggagcagcagcatggtgtagttcctgatcctgag
gcagaatacaacctgtttgaccgtgttgtgaacgtcagagagagtttctctgttccactc
ggccttcgaggaactgtcattggtatcaaaggagctgaacgagaggctgaagttctgtat
gaggtcctgtttgatgaggagtttgctggaggactcactatcaggtgctctcctggtcgt
ggctatcgattgccccccagtgccttaatcaacctgagtcatggcagcaggaaggaaaag
ggttcacacaaactcactgccgttgtcaaaccacagccctcttcctcacatccagcacac
aagagccagctaggtggccttaaccactcgccacgctcaccgtttatacctacacagcag
cagaatggccaacaaagttttaatctcagggctgacactcagggcaacagacactcgcct
cataaagccctcaaccagaaaaaccaacacaaggactctagtacagagatggagttcagt
aatgtgtggcagtctctgcagagttcaggaataccccagaaaccacctgctcactggcaa
aacaatgcttggaaaagcagtggatcagagccacaacagcggcaactggaggtacaaaat
aaacagagccaaggcaacgactcatccaacaaacctgctgcaggtggcaatattagactg
ctcaagagaaatgataatttgaatgctgctctcctacaggggccttcagataaggtatcc
acagaatttgaagagctaatagctaatctgatgatctcaaaggagcctgagcccacccag
taccatccgcctaaagaccccaagagccaatcaggagagcctctctctccacattccttt
gccatgaagggaactctggtgttgaaagaaatgttgaaaattgacaactcggcaacaagt
tcatctgcccctgactctacttcattttctggaggccagaattcggaaacccccaccacc
caacagcaacaacagagcaagagacgctccagcaaaaagctagctgctcggataaacaca
cctcagaatgaggccccagcacttcctctgtcaggccagcctcccatcctgcccagcata
gctgctgagctcggccgggtgtgcatgaatctagggatgggacctccggagtttgccttt
ctccacaacagacagagtctaacagtgtgtcaggtgaaattgtcgaatggtctgctggtg
cacggtcctcaatgtcattctgaaaccgaagccaaagagaaagctgtgctctttgccctt
caacgcttgaactcgttgggttcatttccactgcctccttccatattccctgcagttcag
cagatgaggcctctcgcacctcatcccactatgtttagtcagccaccaggtggtcttttg
atgcccccacaaggctttggaccacttcactggggtatgcaacttcctcaccaggggcag
ccattctatggaggaacattccctggagcatggccccctgcatccacttcagccggcgga
tctcataaccagtttgttcccctccaggtgaccaagaagcgagtttcaggccaatccagg
aaccaagaggcaaaacagctgtcaaccagcactgccaatgctggtcagatcgagggcagc
ggaccttctcaaccagcttcagtgcccccatcagatcacaagacccacacgcacacccat
gagcctgcagagaagcccaccccaaccacacctaagacacccaggcaaaagaccaacact
cacacgcctggctcggcctccaagcggaaacacaggaaactcgcagtcaactttgaggct
gctaaagtgacggactga
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