Myxocyprinus asiaticus (Chinese sucker): 127447903
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Entry
127447903 CDS
T08782
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
masi04147
]
127447903
00535 Proteoglycans [BR:
masi00535
]
127447903
00536 Glycosaminoglycan binding proteins [BR:
masi00536
]
127447903
Exosome [BR:
masi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
127447903
Proteoglycans [BR:
masi00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
127447903
Glycosaminoglycan binding proteins [BR:
masi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127447903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
127447903
NCBI-ProteinID:
XP_051566033
LinkDB
All DBs
Position
11:42314550..42445736
Genome browser
AA seq
1659 aa
AA seq
DB search
MSKLSLCLFALLCLRIQHSHGWFWFDGSKENGKGTQTPAYLTTVRPTSQPRTEPPRKSGT
RASVTGVSKEGEKLGRYLGSGDNFEGSAGEGKSEFISRTGLEGGSGQKSKAESESRSGSV
SEYASGTSQYESQDGYVTSTNLSHIFGENASVHAGNLNLETNSSNVKQVDGHNTDEWTVI
SLDVSFKNVSSYNNINGRNSTVHDNYDNTTQYSLEYFVSDHLLTTESKQFVIASMSTVLE
SPRCLPIDSNLPFCTRMGVENFMVPNFLNQSSVEDVQVVLTEWAWLLGSNCHHSLEWFFC
LLLTPPCNAPGSPPPLPCRSSCEVLRDSCWMLLDEGRLPVECHSLPEDEHDGYQCFSVSN
QKEESGVSLLQLIGDPPPDGITKVYGPDNSPGYVFGPSSNVGQSAAVYLPNPFFRDFSLI
FNIKPTSTKPGVIFSITNPSQNIMYVGVKLSAIVNGNQDIIFYYTEPDSQSSYEAAKFTV
PSMLNTWTRFSISVRNERVSLYFRCDSDPKAVNFERSPDDMDLDAGAGVFVGHASGADPD
KFLGVIGDLRVLKDPRAAEHHCEEDEDDSDEGSGDYVGSGDKDGQQSVQPTPPSSLPLPQ
PPVTSKLTGTTGARGEKGDRGEKGAKGDKGPAGPKGDSGSGSVSGGGSKAEEGAIGEKGM
KGNPGFGYPGPKGDRGSPGPPGPPGPPGPSAEVEVRGDGSVVQRVMGPRGPPGPQGPPGP
AGPAGADGEPGDPGEDGKAGPVGPPGFPGTPGNAGPKGEKGERGEGQPGPRGPPGPPGPP
SRSDRPTFVDMEGSGFGMDIVRALPGLPGPPGRPGPPGPPGLGSSGSGGFGPPGPPGQNG
APGQPGLPGLPGTDGKPGSPGLRGEKGDPGELGLPGPVGEKGAQGSPGSPGLPGESGLAG
LPGPMGPVGPPGPPGPPGPSYHVGFDDMEGSGINFGSVPGVRGPVGRQGLSGLPGQPGKP
GSPGFPGEKGSEGPQGRDGHPGLDGFPGPQGPKGNRGERGDRGEPGRDGTSLPGPPGPPG
PPGQIIYRNSENYDGAGRAGPQGGPGITGQAGLPGPVGPKGDRGEPGAPGYAIKGEKGEP
GHITGPDGNPLYLGGLTGQKGERGNPGPVGPPGPSGPPGSKGEFGMPGRPGRPGVNGYKG
EKGDSGSGSGYGYPGPPGPPGPPGPPGPAVPLDRFSRFEDFARQYPATKGEKGNQGAPGI
PGTPGFASNFDIYALKNEVKGERGETGLKGEKGEPGGGFYDSHFGAVQGPQGPPGNPGLP
GPKGDSIRGPPGPQGSSGPPGVGYDGRPGNPGPPGPPGPPGSQSLPGPYRPAVNIPGPPG
PPGPPGIPGQGSGQVTVLRSYDIMIATARRQTEGALIYILDRGDLYIRVRDGVRQVMLGD
YKPFYGDLNNEVAAVQPPPVVHYSQDHTADNGAEQISPPHKPVEFPWREPNLQYPSQPEP
RYPPHTDNGYNPVQPHIRYPVTPARHPNPPVNQPEGHTHTSGPGLHLIALNAPQVGNMRG
IRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYSIVRKSERDTLPIVNLKDQVLFSSWES
LFSDSESRIKDNAPIYSFDGRDVLRDSAWPEKMIWHGSNGKGHRQTDNYCETWRAGDHVV
TGLASSLQASQLLQQTPSSCSSSYIVLCIENSYITHSKK
NT seq
4980 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagctcagcctgtgcctttttgcactgttgtgcctaaggatacagcactctcat
ggctggttctggtttgatggctccaaggaaaatgggaagggcacgcagacgccggcctac
ctgactaccgtaaggcccacatcacagccgaggacagaaccacccagaaaatcaggtaca
agagcttctgtaactggggtctccaaagagggcgagaagcttggtagatatttgggaagt
ggtgacaatttcgaggggtcagcaggggagggtaaatcagagttcatatccaggactggg
ttggagggtggatctggacaaaaatccaaagcagagtcagaatctagaagtgggtcagtg
tctgaatacgcttctggaacttctcaatatgaaagccaggatggctatgttacttcaacc
aacctgtcacatatatttggtgaaaatgcaagtgtgcacgcaggaaatctcaatctcgag
accaattctagcaatgtgaaacaggtggatggacacaacacagatgagtggacagtgata
agccttgatgtttcttttaaaaatgtgagcagttacaataatataaatggccgtaattct
accgtgcatgataattatgataacacgacacagtattcccttgaatactttgtctcagat
catttactaaccactgaaagtaagcagtttgtcatagctagcatgtcaacagtcctggaa
tctccgcgctgcttgccgattgattctaatttgccgttttgcaccagaatgggagtggag
aattttatggtgcctaattttttaaatcaaagcagcgtggaggacgttcaagtggtcttg
accgagtgggcgtggctattggggtcaaactgccaccatagtttggaatggtttttctgc
ctgctcttgacaccgccgtgcaacgcacctggatcgccgcctccattgccctgtcgcagt
tcctgcgaggtcctccgtgacagctgctggatgctcctggatgagggtcggctccctgtg
gagtgccactctctgcctgaagatgagcatgatgggtatcagtgcttttcagttagtaac
cagaaagaagagagtggagtatcactgttgcaattaattggtgatcctccacccgatggc
atcaccaaagtctatggtcccgataacagccctggttacgtttttggcccaagctccaat
gtgggccaatctgctgcggtttacctgcccaatcctttcttccgtgacttctccctgatc
tttaacataaaacccacgtccaccaagcctggtgtcatcttctccatcacaaacccatct
cagaacatcatgtatgtgggtgtgaagctgtctgccattgtgaatggcaatcaggatatc
atcttctactacaccgagccggactcgcagagctcgtacgaggccgccaaatttactgtg
ccttctatgctgaacacctggacccggttttctatcagtgttcgaaatgaacgggtgtcc
ctttacttcaggtgtgactctgaccctaaagccgtcaactttgagcggtctccagatgat
atggatctggacgctggggctggagtgtttgtcggtcacgccagtggagcagaccctgat
aagtttctgggtgtcatcggtgatctgagggtgttgaaagaccctagggcagctgaacac
cactgtgaggaagatgaggatgactcagatgagggatcaggtgattacgtaggaagtggt
gacaaggatggacaacaatcagtccagccgacacctccctcctctctgcctctcccgcag
ccgccggtgaccagcaaactgacaggtactactggagcaagaggagagaaaggagacaga
ggagagaagggagccaaaggtgacaagggccctgcggggccgaagggcgattcaggatct
ggatctgtgtctggtggtggttcaaaagcagaggagggtgccattggagagaaaggaatg
aagggcaatcccggttttggttatcccggaccaaagggtgaccgtggcagccctgggcct
ccagggcctcccggtcccccagggcccagtgcagaagtagaggtgaggggagatggttct
gtagtgcagagggtgatgggaccaagaggaccacctggaccacaagggccaccaggaccc
gctggccctgctggagctgatggagagccaggtgatcctggtgaagatggaaaggctggc
cctgttggacctcctggttttcccggaactcctgggaatgcaggacctaaaggagagaaa
ggtgaacgaggtgaaggccagccaggaccccgtgggcctcctggccccccaggaccccca
tctcgctctgataggcctacatttgtggacatggagggatctggatttggtatggacatt
gtgcgggcattgcccggtttgcctggcccacctggtcgtcccgggcctccgggtccccct
ggccttgggtcttcaggctctggtggttttggtcctcctggccctcctgggcaaaatggt
gctccaggtcaaccgggactaccaggtctaccaggcactgatggaaaaccaggctcacca
ggcctaagaggagaaaagggtgaccccggtgagctgggcctacctggacctgtgggagag
aagggtgctcaaggttcccctggttcccctggcctcccaggagagagtggacttgctggt
cttccaggaccaatgggacctgttggaccaccagggccacctggtcctcctggcccaagc
tatcatgttggttttgatgatatggaaggctctggaattaactttggttcagtccctgga
gtcagaggacctgtgggaagacagggactttctggtttgccaggacaaccaggtaagcct
ggttcccctggatttcctggtgagaaaggcagtgagggacctcagggaagagatggccac
ccagggctggatggcttccctggaccacagggaccaaaggggaacaggggagagagagga
gacagaggtgaacctggtcgagatgggactagtcttccaggtccacccggcccacctgga
cctcctggacaaattatatatagaaattctgaaaattatgatggagctggaagagcagga
cctcagggtgggcctggtattactggtcaagcaggattaccgggcccagtaggaccaaag
ggtgacagaggcgagcctggtgcaccaggctatgccattaagggggaaaaaggagaaccc
ggacatattactggacctgatggaaacccactttatcttggtggattgacaggccagaaa
ggagagagagggaatccaggaccagtcggtcctcctgggccatctggacctcctggttcg
aaaggtgaatttggaatgccaggcagacctggccgtccaggtgtaaacggatataaagga
gaaaagggagactcagggtctggctctggatatggctacccaggtccacctggtcccccg
ggacccccgggtccccctgggcctgctgtgcccttggacagattcagtagatttgaagat
tttgcaaggcagtatccagctacaaaaggggagaaaggaaaccagggagcccctgggatt
ccaggaactccaggttttgcctccaactttgatatctacgccctcaagaatgaggtgaag
ggagagcgcggtgagactggtcttaaaggcgagaaaggagaaccaggtggtggattttat
gactcgcattttggagctgtacaggggccacaaggaccaccaggaaaccctggacttcct
gggcctaaaggagactcaatcagagggcccccgggacctcagggttcatcaggaccacct
ggtgttggttatgatggccgtccaggaaacccaggtcctcctggtccgcctggcccacca
gggtcacaatccttgccgggaccctatagaccagcggtcaatattcctggacctccaggt
ccccctggccctcctggaatccctggccaaggatctgggcaggtgactgtgctgaggtct
tatgacataatgattgcaacagcacgcagacagacagaaggtgctctcatatatattttg
gacagaggtgatctctacatcagagttcgggatggtgtcagacaagtgatgcttggtgat
tataaaccattctatggagatctgaacaatgaggtggcagcagtccagccaccccctgtt
gttcattattcccaggaccacacagccgacaatggagcagagcagatttctccaccacac
aagccggttgagtttccttggagggagccaaatctgcagtacccctcccagcctgaacct
agatacccaccccacactgataacgggtacaatcctgtgcaaccacatattagatatccg
gtcactcctgcccgccatcccaacccccctgtcaatcaaccagaaggccacacccacaca
tctggaccagggttgcatcttattgccctgaacgctccacaagtgggcaacatgagaggc
attcgtggagcggacttcctgtgcttccagcaagctcgagccgtgggactgaagggaaca
ttcagggccttcctttcctccaaacttcaggatctctacagcatcgtccgcaaatctgaa
agagacacactgccgattgttaacctcaaggatcaagtgcttttcagtagctgggagtct
ctcttcagtgattcagagagcaggataaaggacaatgctcccatctactcgtttgatggc
agagatgtcctgagagacagtgcctggccagagaagatgatctggcatgggtccaatggt
aagggtcaccggcagacggataactactgtgagacgtggagggccggagaccatgtggtg
acaggcctggcctcctccctgcaggccagccaactcctccagcagactcccagcagctgc
tccagctcctacatcgtgctgtgcatcgaaaatagctacattacacactccaagaaataa
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