Myxocyprinus asiaticus (Chinese sucker): 127448170
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Entry
127448170 CDS
T08782
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi04510
Focal adhesion
masi04512
ECM-receptor interaction
masi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127448170
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127448170
09142 Cell motility
04820 Cytoskeleton in muscle cells
127448170
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
masi04147
]
127448170
00536 Glycosaminoglycan binding proteins [BR:
masi00536
]
127448170
Exosome [BR:
masi04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127448170
Glycosaminoglycan binding proteins [BR:
masi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127448170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127448170
NCBI-ProteinID:
XP_051566470
LinkDB
All DBs
Position
1:50055575..50189415
Genome browser
AA seq
1688 aa
AA seq
DB search
MMLRFLVLAVVFCAESTHGGSEHQEPCAGRNCGGACQCLPLKGSRGQPGPLGLVGSSGPE
GFIGGPGPTGPKGENGHAGRKGPSGLKGDKGPMGVPGFSGNDGVPGHPGQEGPRGPPGLD
GCNGTRGDPGDRARDGFPGIPGAPGLPGQKGQKGEPRYVDIPISNIGRRDGDGLPGPDGF
PGPDGFPGPIGPRGPDGFIGRPGPPGPPGPPGSAGQGYKGEPGEKGDVGLPGLRGSPAVQ
FNAPAISTINKGEKGDKGYAGNPGLPGSPGPIGFTGETGEKGILGLPGLRGPPGLNGPPG
APGRKGFTGSLGFLGQPGFPGPKGERGEPGPPGPYFPSTDDIPGPQGDPGLAGYPGLSGD
PGPPGLPGLPGPPGVSSFVTGRPGSAGFPGSRGPKGQKGSPGRDSYGPEGLAGSPGLPGP
PGPPGPPGKTLSINPFSVALPGPPGQRGPPGDRGYKGFKGEDGDCNCLGGTTTGARGLPG
PAGPSGFIGPGGAKGEMGDPGFPGSRGPQGPDGRAGERGFFGRKGEKGNPFFPQGRGQKG
DMGQQGPLGPLGSSGNPGRDGSPGFPGPPGPPGDPGFGVTGDKGFPGIPGFKGRPGAVGD
PGIGYPGIAGFKGAQGDPGFNGLPGSPGPPGPSGDSCLQVGLNDASLEEGGTPLPCRIPG
EPGDPGFGGLPGVPGTQGQPGSPGVSGRPGFDGPKGERGEPGTGGLPGPQGFSGPRGDPG
LPGVTKAGLQGSPGRDGLPGVPGAKGEPGVVLGATPGAPGLPGRPGEPGNKGQPGTPGLP
GTPGIDGRNGFPGAKGERGVNGIPGPQGPIGPPGELSPGGISGLRGPDGAKGFPGPSGFP
GLKGVRGDPGPPGSGGIKGATGFPGVPGTQGFRGLPGPPGAGARPGTPGRPGIKGERGSP
GLLGFPGLPGSPGIPGNPGVKGSPGLIAQDALPGRDGAKGLKGDRGSTGPPGPSPTVVPS
KLQEKGEPGVPGSSGLPGFPGPRGDKGFSGPPGRPGLPGLPGIADQAKGFPGQPGIPGIP
GSSGFPGPKGSPGVMGFPGMPGPRGDDGGPGFQGFSGSQGQPGAKGEKGDSYSVPGPPGP
KGVVGDPGFSDGPGLRGERGDPGFPGVPGFQGQKGYPGEPGAPGFGGPPGLPGSKGLPGY
PGQKGRDGEQGRLGASGPAGEKGLPGLPGLDGLNGLPGSKGPPGVPGVIEGGQQGAPGRD
GLKGERGPSRPGAPGLPGERGFKGENGAPGRRGLPGNPGPPGPPSPSNIPGLLGDPGLPG
LDGREGTFGPPGLPGPPGPGTVQGDKGDAGYPGLPGIPGARGDPGGSGAPGFQGNPGFKG
QRGDPGFSGLPGPPGFPGESGGYGMKGFKGQKGDPGPKGLPGTIYPPSNYTQNRPPGNPG
PPGFDGPLGQPGTPGQPGSPGSPGPKGLRGPVGRLGPVGAAGPPGGFGEPGPSGVQGPTG
TQGTPGQPGLPGPPGLPARSSSIGYTLVKHSQSTLVPMCPQGMAKLWDGYSLMYVEGQEK
AHNQDLGLPGSCLPHFSTIPFLYCTVNELCYYASRNDKSYWLSTTAPIPMMPVADQQISQ
YISRCSVCEAPSHAVAIHSQDLTIPTCPQGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGS
CLEDFRSTPFIECNGAHGTCHYFANKYSFWLTTVELDDQFVQGPSQETLKGEQYRSRISR
CQVCMKIL
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgatgctaaggtttttggtgttagctgtggtcttttgtgcagagtctacacacgggggg
tcagagcatcaggagccatgtgcaggccggaactgcggtggagcgtgccagtgtttgccc
ttaaagggtagcagggggcaaccagggccacttggactggtgggaagcagcggtcctgag
ggtttcattgggggccctgggcccaccggcccgaaaggagaaaatggtcatgctggacgc
aaagggccctctggactgaaaggagacaagggcccaatgggtgttccggggttttctggt
aatgatggtgttcctggacaccctgggcaggaggggcccaggggaccaccaggtctggat
ggctgtaacggcacgcgaggtgacccaggtgacagagcccgtgatggatttcctggtata
cctggagcacctggactccctggtcaaaaaggacagaaaggagaaccacgttatgtagat
ataccaatatccaatatagggcgcagagatggcgatggccttccaggtccagatggattt
ccaggtccagatggatttccaggtccaattgggcccagaggtccagatggatttattggt
cgtcctggtccacctggtcctcctggacctccaggaagtgcaggtcaaggatacaaaggg
gaacctggagaaaagggggatgttggtctaccgggactcaggggcagtccggccgttcag
tttaacgcaccagcaataagcactatcaacaaaggagagaagggggataaaggctatgca
ggtaatccaggcctccccgggagtccaggaccaataggttttacaggtgagactggtgaa
aaaggaatcctgggcttgccaggcttgaggggtccacctggtctgaacggacctcccggg
gctcctggcagaaaaggcttcactggaagtctggggtttctgggccaaccaggctttcct
ggaccaaaaggtgaaagaggagaaccaggtccccctggaccatactttccttcaacagat
gacattccaggtcctcaaggtgatcctggtcttgctggttatccagggctaagcggagat
cctggtcctccaggacttcctggtctgcctggtccaccaggagtgtcttcttttgtcaca
ggtcgtccaggcagtgctgggttcccaggtagtcgtggacccaaaggccagaagggaagc
ccaggtcgggattcctatggccctgaaggtcttgccggtagtccaggccttcctggaccc
ccaggtccacctggaccaccgggcaaaacattatctataaatccattctctgtggcatta
ccaggacctccaggtcagagagggccacctggcgacagaggctataaagggtttaaagga
gaagatggcgactgcaattgtttgggtggaacaacgactggtgcacggggacttccaggg
cctgcagggccttcgggtttcataggacccggtggtgcgaagggagaaatgggtgaccca
ggcttcccaggatcccgtggaccacagggtccagatggccgtgcgggtgagaggggcttt
tttgggcgtaaaggagagaaaggtaatcccttcttcccccaaggcagaggacaaaaaggt
gacatgggtcagcagggtcctcttgggccacttggatcaagcggcaaccctggaagagat
ggatctcctggcttccctggaccaccaggcccacctggagatccaggttttggggttact
ggagataaaggttttcctggtatcccagggttcaaaggtcgtcccggtgctgttggagat
cctggtattggctatcctggcatcgctgggttcaaaggggcacaaggtgatcccggattc
aacggtcttcctggatcacctggacctccagggccttcaggtgacagctgtttgcaggtg
gggcttaatgatgcctctttggaagagggaggaacgccactgccgtgcaggattcctggg
gaacctggggatccaggattcggtggtcttcctggggtgccaggaacacagggtcagcct
ggttccccaggagtgagtggacgtccaggttttgatgggccaaagggtgagagaggagaa
ccaggcactggaggtctgccaggacctcagggtttctctggacccagaggagatccaggt
ttaccaggagtaacaaaagctggcttacaagggtctccaggaagagacggtttgccaggt
gtgcctggagcaaagggagaacctggtgtggtgcttggggccacccctggagctccaggt
cttccaggaagaccaggagagccagggaacaagggtcaacctgggacacctggtttaccc
gggacccctggtattgatggacgcaatggtttccctggtgcaaagggtgagcgaggtgtg
aacggaatacctggtccccagggtcccattggtccaccgggcgaattgtctcctgggggt
atctctggactcagagggccagatggagctaaaggatttcctgggccttcaggtttccct
gggttgaagggtgtgagaggagatccagggcctcctgggtctggtgggataaaaggtgcc
actggttttcctggtgtcccagggacacagggatttaggggacttcctggtccccctggt
gctggagcacgtccaggcacacctggacgaccaggaataaagggggagaggggatctcca
gggttgttaggattccctggattgcctggttctcctggaattccaggtaacccaggtgtc
aaaggttcgcctggtttaattgcacaggatgcgttacctgggagagatggagcaaaagga
ctaaaaggggatcgtggctctacaggtccaccgggaccctctcctacagtggttccatct
aagctgcaggaaaagggtgaaccaggtgtcccaggaagcagtggattgcctggttttcca
gggccaagaggtgataagggtttttccgggccacctggtcgtccggggttacctggactg
cccggtattgccgaccaagcgaaaggttttcctggtcagcctggaatcccaggcattcct
ggttcctctggcttccccggacccaaaggatcacctggtgtcatgggattccctggcatg
ccaggaccaaggggtgatgatggtggacctggatttcaaggattttcaggcagtcaagga
cagcctggtgccaaaggtgagaaaggtgactcgtattcagtacctgggccccctggacca
aagggtgtggtgggagatcctggattctcagatggtccaggacttcggggtgaacggggt
gatccaggtttcccaggagtcccgggattccaaggccagaaaggttatcctggagagcca
ggagcaccaggatttggtggcccaccaggtctcccaggcagtaagggtctccctggttat
ccaggacagaagggacgtgatggagagcaaggtcgtcttggagcttcaggtccagcagga
gagaaaggtctaccaggcttacccggtttagatggactcaatggtcttccaggatccaag
ggcccccctggagttccaggagtgattgaaggtggtcagcaaggagctcctggtagggat
ggtctgaagggagagagaggcccatcacggcccggagcccctggcctgcctggagagaga
ggatttaaaggagagaatggtgcccctggtcgacgaggcttacctggtaatccaggcccc
cctggcccacctagtccttctaatatcccaggtctgctcggagaccccggacttccggga
ttagatggacgagaaggtacctttggccctcctggcctccctggtccaccagggcctgga
acagtccaaggagacaaaggagatgccggatatcctggactaccaggtataccaggagca
cgcggagaccctggtggttctggagcacctggatttcaaggcaaccctggattcaaagga
caaagaggtgaccctggttttagtggtttacctgggccaccaggttttcctggagaatca
gggggttatggcatgaaaggattcaaaggacagaagggtgatcctggtcctaaggggctt
ccaggtactatatacccacctagcaactatactcaaaataggccacctgggaatcccggc
ccaccaggttttgatgggcctcttggtcagccaggaacaccaggccagccaggcagtcca
ggatccccaggtcccaaaggactcagagggccagtgggtagacttggtccagttggtgca
gctggacctccgggaggttttggtgagcctggaccttcaggagtccaaggacccacagga
actcaaggtacccctggccaaccggggttgccaggtcctccggggttacctgcgcgcagt
agcagtattggttatactctggtgaaacatagtcagtccaccctggtgcccatgtgtcct
caaggcatggcgaagttgtgggatggctacagtttgatgtatgtggagggacaggagaaa
gcccacaaccaggatttgggattgcctggttcctgcctgcctcatttcagcaccatcccc
ttcctgtactgcacagtcaatgaactttgttactacgccagccgcaatgacaaatcctat
tggctgtccaccacggcgcccattcccatgatgcctgtggcagatcagcagatatctcag
tacattagccgctgctcggtgtgtgaggccccttctcatgcagtcgctatccatagtcaa
gacctcaccatacctacctgccctcagggctggcgaagtctgtggattggttactccttc
cttatgcacacggccgcaggtgcagaaggaggtggtcagtctttggtgtctcccggttct
tgtctggaggatttccgttccacacccttcattgagtgcaatggtgcccatggcacctgc
cactactttgccaacaagtacagtttctggttgaccacagtagagctggacgatcagttc
gttcagggtccatcccaggagaccctgaaaggagagcagtaccggtcacgcatcagtcgc
tgtcaagtctgcatgaagatcctgtag
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integrated database retrieval system
