Myxocyprinus asiaticus (Chinese sucker): 127449008
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Entry
127449008 CDS
T08782
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127449008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
masi03041
]
127449008
03009 Ribosome biogenesis [BR:
masi03009
]
127449008
Enzymes [BR:
masi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127449008
Spliceosome [BR:
masi03041
]
Complex A
U1 snRNP components
U1 related factors
127449008
Complex B
127449008
Ribosome biogenesis [BR:
masi03009
]
Eukaryotic type
Pre-60S particles
Helicases
127449008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
127449008
NCBI-ProteinID:
XP_051568029
LinkDB
All DBs
Position
12:17973159..17996102
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AA seq
619 aa
AA seq
DB search
MPGYSERDRGRDRGYGSSAPRFGGGRSGPPSGKFGNPGERLRKRHWNLNELPKFEKNFYK
EHPDVTRRSMQEVEQYRRGKEVTVKGRDFPKPIIKFNEANFPNYVIDVISKQSWSEPTPI
QAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHINHQPFLEHGDGPICLVLAPTRELA
QQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGTVGVEICIATPGRLIDLLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDY
CQINIGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFVETKRRCDEL
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKACILIATDVASRGLDVEDVKFVINYD
YPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQANDLISVLREANQAINPKLIQMAED
RGGRSRGGRSGYKDDRRERYSGGSRRDFSSYRDRDSDRGYGSGPKAQSGGYGGSSFDKSK
NCSSSFGNGYGGKGQANYNLANSVATFGNQNFQNQPFPGNQAPAQNGMNHPQYPYNPSQQ
PQQPPQPMVPYPMPPSFPQ
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagagagagatcgtggcagagacagagggtatggcagcagtgcccct
cgatttggtggaggccgcagtggtcctccatctgggaagtttgggaaccctggtgagaga
ctgcggaaaaggcactggaacctgaatgagcttcccaagtttgagaagaatttttacaaa
gagcaccctgatgtcactcggagatcaatgcaagaagtggaacagtaccgcagagggaaa
gaagtgacggtgaaaggcagagattttcctaaacccatcattaagttcaatgaggccaat
ttccccaattatgtgattgacgtgatctctaaacagtcctggtctgagcccacccctatt
caggcccaggggtggccattggcactcagtggaaaagacatggttggcattgcccagaca
ggatctgggaaaaccttggcttacctgctgcctgccattgtgcacattaaccaccagcct
ttcctggaacatggagatggccctatttgcttggtgctggcccccactcgtgaactggca
cagcaggtacagcaggtggctgcagagtatggaagagcttcccgcctgaagtccacttgc
atctatggtggagcacccaaaggacctcaaatccgtgatcttgaaagaggtactgtaggt
gttgagatctgcattgcaacccctggtcgtttgattgacttactggaggcaggaaaaacc
aacctgcgtcgctgcacatacctggttcttgatgaggccgatcgtatgctggacatggga
tttgaacctcaaattcgcaaaattgttgatcagattcgtcctgacagacagactctgatg
tggagtgctacatggcctaaagaggtgcgtcagctggctgaggacttcctgaaggattat
tgtcagatcaatataggagcgctgcagcttagcgccaatcataacatcctgcagatagtg
gacgtctgcaatgatggagagaaagatgacaaacttttgcggttgttggaagagatcatg
agtgagaaggagaacaagacaatcatttttgtggagacaaagaggagatgtgatgagttg
accaggaggatgaggagagatggctggcctgccatgggtattcatggtgacaagagtcag
caggaaagagactgggttctgaatgagtttaagtacgggaaagcctgcatcctgattgca
acagatgttgcctcacgtggcttagatgtggaggatgtgaaatttgtcatcaattatgac
taccctaactcatctgaagactatatacatcgcattggaagaacggctcgcagtcaaaaa
acaggcacagcctacaccttctttactccaaacaacatgaaacaggccaacgacctcatc
tctgtcctccgtgaggcaaaccaagccatcaacccaaaactgatccagatggcagaggac
agaggaggtcgttcccgtggcggtcgcagtggctataaggatgaccgtcgggaacggtat
tctggtgggagtaggagagattttagtagttacagagatagggatagtgaccggggatat
ggtagtggaccaaaggcacagagtggaggctatgggggcagcagctttgacaaaagcaaa
aattgcagcagtagctttggtaacggctatggtggcaaaggacaagccaactacaatttg
gcaaactctgtggctacctttgggaatcaaaatttccagaaccagccattcccgggaaac
caggctccagcccagaacgggatgaaccacccacagtacccctataacccttctcaacaa
ccccagcagccaccacagcccatggtgccctaccccatgcccccctctttcccccagtag
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