Myxocyprinus asiaticus (Chinese sucker): 127450073
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Entry
127450073 CDS
T08782
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127450073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
masi03019
]
127450073
03041 Spliceosome [BR:
masi03041
]
127450073
Messenger RNA biogenesis [BR:
masi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
127450073
Spliceosome [BR:
masi03041
]
Complex B
Other components
Prp19-related factors
127450073
Complex C
127450073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_19
Suf
TPR_2
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
NRDE-2
TPR_MalT
TPR_1
DUF4515
Motif
Other DBs
NCBI-GeneID:
127450073
NCBI-ProteinID:
XP_051569764
LinkDB
All DBs
Position
13:14550820..14562802
Genome browser
AA seq
849 aa
AA seq
DB search
MPTLSGKADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAPKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDSAYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYIE
YLRSVGRLDEAALRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQDEDDDIDLELRLARFELLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGQPRQIINTYTEAVQTVDPVKSTGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEDSFKAYERGI
ALFRWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKYAKTIYLLYAKLEEE
YGLARHAMAVYERATAAVEPEERFQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRMTAHFWQMWKDFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTNATGTVSDLAPGQSGVDDMKLLEQKAQQLAAEAEQ
DKPKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDEDEDAEDGEPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccaactcttagcggaaaagcagacgttttattcgaagatgatgatttaccttatgaa
gaggagatcatcaggaatccatattcagtcaagtgctggatgcgctacattgagcataag
cagaatgctccgaaatctgtgctcaatatgatctatgaaagagctttgaaagagctgccc
ggcagttataagctgtggtacaactacctgagagagaggaggaaacaggtgaaaggcaag
tgtgtcacagattcagcctatgaggaggtgaacaactgtcacgagagagcactagtgttt
atgcacaagatgcctaggatatggattgattactgtcagttcatggtgtctcaatgcaaa
attacgcggagccgacggacatttgatagggcgttaagagcactgcccgttactcagcac
cctcgcatctggcccctttatcttcggtttgctcgaaacttacctctccctgaaaccgcc
atccgtgtttatcgtcggtacctaaagttatctccagagaatgctgaggaatacattgaa
tatctgcgttctgttgggcgtctggatgaagctgcactccgactggcagctgtggtcaat
gatgaaaactttgtttctaaagaggggaaatctaattatcagctctggcacgagctctgc
gacctcatctcacagaacccagacaaggtgacgtcattgaacgtgggagccattatcaga
ggaggtctcacccgcttcaccgaccaacttggcaaactctggtgttccttggctgattac
tacatccgcagtggccactttgaaaaggctcgagatgtatatgaggaagcaatcctaaca
gtagtcaccgtacgagacttcacccaggttttcgacagctatgcacagtttgaggagagc
atgatcgcggccaagatggagaccacgtctgaactgggccaggatgaagatgatgacatt
gacctggagttacgattagcacgcttcgagctgctgataacccggcggccccttctgttg
aatagtgtgctgctgcgtcagaaccctcacaatgttcacgagtggcacaagagagtcaaa
ctctatgagggccaacctcggcagataatcaacacgtacacagaggcagtgcaaacagtt
gacccagtgaagtccaccgggaagcctcactctctctgggtctcctttgccaaattttac
gaggaaaatgagcaactggatgatgctcgcactatcttcgagaaggccaccaaggtgaac
tacaaacaggtggatgatctcgcagcagtatggtgcgagtatggcgagatggagctgaga
catgagaactacgaccaggctttgcgtatactgaggaaagccacagcgatccctgcaaga
aaagcggagtactttgatgcgtcagaaccagtgcagaatcgagtgtacaagtcccttaaa
gtctggtccatgcttgcagacttggaggaaagtcttggcacattccagtccactaaggca
gtgtatgatcgtatcattgatctcagaatcgccacgcctcaaattatcatcaattatgcc
atgttcctcgaggaacacaaatactttgaggatagcttcaaggcatatgagcgtggtatt
gccctcttcaggtggcctaatgttcatgacatctggaacacttacctcactaagtttatc
gatcgttatggaggcaagaagctagagagagcgcgggatctatttgagcaagcactggat
gggtgtcctgctaaatacgccaaaaccatctacctgctttacgctaagctggaagaggaa
tacggtctggcacgccacgccatggctgtgtatgagagagccactgcggctgtagaacca
gaggaacgctttcaaatgttcaacatctacatcaaaagagcagcagagatttatggagtc
acacacacaagagccatctatcagaaagccatcgaggtcctgccggatgagcacgctaga
gacatgtgcttgcgctttgctgacatggagagcaaacttggagaaattgatcgagcaaga
gccatctattcctactgctctcagatctgtgatccaaggatgactgctcatttctggcaa
atgtggaaggactttgagattcgccacggaaacgaggataccatccgtgagatgctgagg
attaaacggagtgtgcaggccacatacaacacacaggtcaacttcatgtcctctcagatg
ttaaaggccaccaccaacgccactggaacagtgtcagatcttgctccgggccagagcggg
gtggatgacatgaagctgttggagcagaaggcgcagcagctggccgcagaggccgagcag
gacaaacccaaacctaaagacaagatcctctttgtcaggagtgacacctctcgcagtgaa
ctggccgaactggccaaacaggccaatcctgatgagattgacattgacgatgatgaggat
gaggatgcagaagatggagagccagatgaggttcagctggagcagaagtctgtccccact
gctgtcttcggaggactaaaggatgattga
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