Myxocyprinus asiaticus (Chinese sucker): 127452104
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Entry
127452104 CDS
T08782
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi04382
Cornified envelope formation
masi04510
Focal adhesion
masi04512
ECM-receptor interaction
masi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127452104
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127452104
09142 Cell motility
04820 Cytoskeleton in muscle cells
127452104
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
127452104
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
masi04147
]
127452104
00536 Glycosaminoglycan binding proteins [BR:
masi00536
]
127452104
Exosome [BR:
masi04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127452104
Glycosaminoglycan binding proteins [BR:
masi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127452104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127452104
NCBI-ProteinID:
XP_051573271
LinkDB
All DBs
Position
2:complement(52486750..52587535)
Genome browser
AA seq
1679 aa
AA seq
DB search
MRMNFKSLGAVLLFLTLCIEVQKSESAACHGCGTGSKCDCSGVKGEKGDRGFPGLSGQPG
VPGFPGPEGPIGPRGEKGDDGPAGPMGPKGIRGPSGLPGFPGTPGIPGIPGQDGAPGPRG
IPGCNGTKGEKGFTGSPGFPGLDGPQGPPGFPGQKGEPGEINEISRFTDNGDPGIDGLPG
SRGDPGLQGLPGPIGPAGPRGYEGRPGPPGPPGPKGNMGLNFQGPKGEKGDRGLQGPPGP
PGQVGEVSGLPDTVIQQGEKGDRGIPGDPGFPGPPGPPGPLGGQKGDKGEPGDPGKRGKP
GKDGDSGLPGFQGEKGDLGSPGLPGRDGTRGEKGEPGPPGPPGFGGAPFTGGRGPKGERG
DPGSPGPKGDRGLPGFQGPPGPQGSPGIGGPGPSGPPGLPGERGDKGDEGQPGITLPGPP
GRSGFPGPQGLQGPPGPPGIFNGDQECSRGLPGPPGLQGERGFPGDVGQKGQKGETCVNC
FTNGNPIPGPPGFPGPPGNPGAPGYSGPKGDRGFPGGPGFMGPPGTQGPQGPPGFPGEKG
DPGDAIPVPGVKGEKGDTGFPGPPGLPGLDGRPGRDGVPGPPGLRGPPGSALLKGTQGPP
GDPGLTGPPGDRGLPGSPGFGPQGPSGEKGIQGVSGRPGAPGVPGQKGEPGLAVSEKGER
GPQGRDGDPGLPGSPGNPGPPGQAGFPGIPGTKGEPGLPGFGLPGPPGAKGFPGIAGSPG
GPGIPGRPGLDGLPGQPGLPGSKGEPGFGLPGPSGPSGFPGSKGASGPKGDPGFPGNPGA
PGRPGLDGAPGTKGDPGFPGGPGPRGPPGPPAFGLQGPPGPPGAPGPMGTPGVPGLNGEK
GDRGPTGPSIPGLQGDRGSPGLSGPPGSIGPPGSPGVPGQDGQPGLPGPKGDMGAMGMPG
PAGVPGNPGRSGFPGPKGDDGVPGRQGSPGFEGSKGDRGDPGLPGPPGQIISSVANKGQK
GEPGIPGLSGPPGAKGISGLRGDPGFPGQDGQPGLPGPPGPKGDPGLPGNPGSPGVPGLK
GSMGEMGFPGVPGVKGNPGQSGRTGQPGSPGAPGFPGPKGDPGSAGYGLPGNPGPKGEPG
IPGSPGMPGLKGQPGVPGPSGLTGSTGPKGDPGLPGFQGAPGIPGPKGLDGVPGPPGLNG
APGRPGDPGRSGPTGIPGDKGLAGRDGIPGPAGQKGEPGAPGLGGPGPPGFPGSPGPKGD
PGFPGSPGSPGFPGPKGEAGFPGLPGQSGPVGPPGPPGLPVQGPKGNQGPPGPPGRTGPP
GPEGPRGPSGSGGVKGEKGLSGFPGTPGAPGLKGDYGSPGFPGPPGPPGPPGLKGDFGPQ
GVAGFPGAKGQLGPPGPAGIPGDRGENGTPGPPGDPGQSPVPIVVKGERGPPGPPGIQGN
RGPPGPLGLQGLPGSPGNPGDPGPMGPPGFPGSPGRKGDLGPSGQPGLRGYPGPPGPDGI
QGPPGYSGSSSAAHGFLITRHSQTTEVPICPDGTGLVYDGYSLLYVQGNERAHGQDLGTA
GSCLRRFSTMPFMFCNINNVCNFAARNDYSYWLSTPEPMPKSMAPISGEGIKPFISRCSV
CEAPAMVIAIHSQTIQLPTCPQNWDPLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRS
APFIECHGRGTCNYYGNSYSFWLATVDVNEMFRQPQSETLKAGNLETRVSRCIVCMKRT
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atgagaatgaactttaagagtctcggcgcagtgttactgttcctaactctatgcatagag
gtacagaagtccgagtctgcggcatgtcatggctgtggaacgggatcaaagtgtgattgc
agtggagtgaaaggagagaagggtgatcgagggtttccaggactatcaggtcagccaggt
gttccaggtttccctggaccagaggggccaattggacctcgtggagagaagggtgatgat
ggacctgctgggccaatggggccaaaaggaataagaggaccttctggattgccaggattc
ccaggaacaccaggaattccaggtatcccaggacaggatggcgccccaggacccagagga
attcctggctgtaatggaactaaaggtgaaaaaggatttacaggaagtccaggttttcca
ggtttagatggtccacaaggtccacctggttttccaggacagaagggagagcctggtgaa
atcaatgaaattagtcgctttacagataacggggatcctggcattgatggtttgccgggt
tccaggggcgatcccggactccaaggtcttccaggtcccatcggtcctgctggtccccgt
ggttatgagggtcgtccaggtcctcctggtccaccaggaccaaagggaaacatgggattg
aacttccaaggacctaaaggagagaagggtgatcgtggattacaaggacctccggggcca
ccaggacaggttggcgaagtctcaggcttacctgacacagtcattcaacaaggagaaaag
ggtgatcgtggcatacccggagatcctggatttcctggccctcctggacctcctggccca
ctaggtggccagaaaggtgataaaggagaacctggggatcctggaaagaggggaaaacct
ggcaaagatggtgactctggtctcccaggatttcagggtgaaaagggagatttaggttct
cctggtctacctggtagagatggtaccagaggtgagaaaggagaaccaggacctcctgga
cctcctggatttgggggtgcgccattcacaggtggaagaggaccaaaaggagaacgtggt
gaccctgggtcacctggccctaaaggagatagaggacttccaggttttcagggaccacct
ggtccacaaggttctccaggaattgggggtcctggtcctagtggtccaccgggtttacct
ggagagagaggagacaagggtgatgaaggacagccaggaatcaccctccctgggccacct
gggaggtcaggttttccaggtccccaaggtctccaaggacctcctggtcccccaggaatc
ttcaatggtgatcaggaatgttctcgtggtcttcctggacctccaggcctgcagggggag
cgtggatttccaggagatgtaggccagaaaggtcaaaagggagagacttgtgtgaattgc
ttcacaaatgggaaccctatccctggaccaccaggttttccaggtcctcctggaaatcca
ggtgcacctggatattctggtcctaaaggagacagaggattccctggagggccagggttc
atgggcccacctggcacacaaggacctcagggtccccctggattccctggagagaagggt
gacccaggtgatgccatccccgttccgggtgtgaaaggggaaaagggagacacaggcttt
cctggccctcctggactgccaggactggacggaagacctggtcgtgatggagttcccggt
ccccctggcctcagaggaccacctggttctgcactgttgaaaggcacacaaggtccccct
ggtgatcctggcttgacgggtcctccaggagacaggggtctgcctggttccccaggattt
ggtcctcagggaccctctggagagaaaggtatccagggcgtttcaggaagaccaggggct
cctggagtaccaggtcagaaaggtgaacctgggctagctgtgtcagagaagggtgaacgt
ggaccccagggtcgtgatggagatcctggtttgccaggaagtccaggtaacccaggccca
cctggacaagctggtttcccaggtatccctggaaccaaaggagagcctggtcttcctggt
tttggcttgccaggaccccctggtgctaaaggatttcctggtattgctggttcccctggt
gggcctggcattcctggacggccaggtttggatggactccctggtcagcctggattacct
ggatccaaaggagaacctggctttggtttaccgggcccttcaggtccttcaggattccca
ggcagtaaaggtgcatccgggcctaaaggtgatcctggtttccctggaaaccctggtgca
ccagggcgaccaggtcttgacggtgcccctggaactaaaggtgatcctggttttcctggt
ggtcctggtcctcgtggccccccagggccccctgcctttggccttcagggcccccctggt
cctcctggagcacctggccctatgggaactcctggagtccctggtttgaatggagagaag
ggagaccgtggccccactggtccgagtattccaggactgcaaggtgacagaggaagccct
ggactctctggacctcctggctcaattggcccacctgggagtccaggagtacctggtcaa
gatggccaacctggactgcctggacctaaaggggacatgggtgccatggggatgccagga
cctgcaggtgtccccggcaaccctggaagatcaggctttccaggaccaaaaggagatgat
ggtgtcccaggacgacaaggtagcccaggtttcgaaggatcaaagggagacagaggtgat
ccaggccttccaggcccacctggccaaattatatcttcagtcgcaaataagggacaaaaa
ggagaacccggaattccaggtttgagtggaccaccaggagcaaagggtatttctggtctc
cgtggagatcctggctttcctgggcaagatggacagccagggctaccaggaccaccaggc
cccaaaggtgatcctggtcttccaggaaatccagggtccccaggagtgccaggactgaag
ggtagcatgggtgagatgggattcccaggagttcctggagtgaagggaaaccctggccaa
tctggccgaactggccagcctggatcaccaggagcaccaggcttcccgggacccaaaggt
gatcctggctcagcaggatatggtttaccaggaaatcctgggcctaagggtgaacctgga
attccagggtcccctggaatgccagggctgaaaggccaacctggtgttccaggaccttcg
gggttgactggcagcactggacccaagggtgacccaggactcccaggattccaaggtgca
cctggcattcctggccctaaaggtttggatggagttccaggccctcctggtcttaatgga
gctcctggtaggccaggagatcctggccgatctggaccaactggcattcctggtgataaa
ggtcttgctggtcgcgatggcatcccagggcctgcaggacaaaagggtgaaccaggtgct
ccaggtcttggtgggccaggtccacctggtttccccgggtcaccaggtcctaaaggagac
cctggctttcctggttctcccggtagtcctggatttcctggtccaaagggtgaggcagga
ttccctgggttgccaggacaatctggtcctgtagggccacctggccctccaggtctgcct
gtgcaggggcctaaaggtaaccaaggcccacctggtcctcctggaagaaccggtcctcct
ggccctgagggtccccgtggcccttcaggtagtggaggagttaagggtgagaagggctta
tctgggttccctggaacacctggtgcacctggactgaaaggagattatggttcccctggt
ttcccgggtccaccaggtcctccaggaccccctgggcttaaaggagattttggacctcaa
ggagttgctggattcccaggagctaaaggacagcttggccccccgggtcctgccggcatc
cctggggaccgtggtgaaaatggcactccaggacctcctggtgacccaggtcagtcgcca
gtccctattgttgtgaagggggagcgtgggcctcctggaccacctggtatccaaggcaac
agaggcccaccaggacccctgggattgcagggtcttccaggttcacctggcaaccctggt
gacccaggtccaatgggacctccaggatttcctggctcacctggaaggaagggagattta
ggaccatctggacaaccaggtctgcgtggttaccccggccctcctggtccagatggaatt
cagggccctccaggttactcaggatcatcatctgcagcacacggttttctgatcacacgc
cacagccagaccactgaagtgccaatttgtcctgatggcacaggcctcgtctatgatggg
tactctttactctatgtgcagggcaacgagagggcacacggacaggacctgggtacggct
ggtagctgcctacgtcgtttcagcaccatgcctttcatgttctgcaacatcaacaatgtt
tgcaactttgccgcccgcaatgactactcctattggttatccacaccagagcccatgccc
aagagcatggcgcccatcagtggagaaggcatcaaacccttcatcagtaggtgttctgtg
tgtgaagccccagccatggtgattgctatacacagccagaccattcagttgccaacctgc
ccacagaactgggatcccctctggattggttactccttcatgatgcacaccagtgcaggt
gctgaaggctcaggtcaggctcttgcctctcccggatcctgtctggaggagttccgctcc
gctccgttcattgagtgccatggtcgaggcacctgcaattattacggcaactcatacagc
ttctggctggccactgtggatgtgaatgaaatgttcagacagccgcagtcggagacacta
aaagctggaaacttggagacccgtgtgagccgctgtattgtgtgcatgaagaggacgtaa
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