Myxocyprinus asiaticus (Chinese sucker): 127456343
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Entry
127456343 CDS
T08782
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127456343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
masi03019
]
127456343
03012 Translation factors [BR:
masi03012
]
127456343
Enzymes [BR:
masi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127456343
Messenger RNA biogenesis [BR:
masi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127456343
Translation factors [BR:
masi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
127456343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
NPHP3_N
ATPase
NB-ARC
AAA_14
TsaE
DUF7428
ABC_tran
Motif
Other DBs
NCBI-GeneID:
127456343
NCBI-ProteinID:
XP_051580749
LinkDB
All DBs
Position
18:complement(15810326..15868203)
Genome browser
AA seq
1024 aa
AA seq
DB search
MNRGYGSNRRGRGGGGGRRFGDGGSRWDGEAGSSGGRGGYQRHSEWDSNEEQGHGGGRRG
GDGGPRGKHPPHLKGREIGLWYAKWGGKQRADAERKSRAVVQMDETQEQRITQLLHTVQR
DPSRDAHPSTSQTWRVKEEPSGHSYFDGEDPPQPENVMKVSKIEPKEEKQEVELQANVKK
EPYDSDLEYLSQSVVRKPSLDEELKNDQQKKREKPRYLEMLKFREKLPSYGMKEELVRLI
SANQVLVISGETGCGKTTQVTQFILDDYIQRGMGSLCRVVCTQPRRISAISVAERVAAER
AESVGEGKSCGYQIRLQSRLPRKQGSVLYCTTGIILQWLRSDPNLSSISHLVLDEIHERS
LQSDVLLTIVKDLLTARDDLKVVLMSATLNAEKFSRYFDNCPMVHIPGYTYPVQEYLLED
VVEMLRFRPQQQDCRPRYNRGFFHGKNVRPEKEHKEAEYNESWPCYARTLRDRYSDSTID
VLEMMNDDDKINLDLIVALIRHIVMNDDDGAILVFLPGWDNISSLNDLLTADQMFKSDRF
IIIPLHSLMPTVSQTQVFKKPPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDT
QNNISTMAAEWVSLANAKQRKGRAGRVSPGKCYHLYNGLRASLLDNYQLPEIQRTPLEEL
CLQIKILKLGSIASFFRKNLDPPSEKAIELAITHLMDLNALDRNEELTPLGFHLARLPVE
PHIGKMILFGALLGCLDPVLTIAASLSFKDPFYIPLGKEKIADHRRKILSKNSRSDHLTI
VNAFLGWEDAKRQGSRYEREYCWENFLSASTLQMLQNMKGQFAEHLWAAGFVKSKDPKDP
SSNINSENEKLIKAVIVAGLYPKVAKIRPNQSKKRPTHVKVYTKADGKVCIHPKSVNAEE
TEFHYTWLIYHLKMRTTSIFLYDCTEVSPFSLLFFGGDISIQKDQDQETIAVDEWIVFQS
PARIAHLVKDLRKELDVLLEEKIKSPRPVDWNDCQSKDCNVISAIIDLITTQETPAGGPR
RGSQ
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgtgggtatggtagtaatagacggggtcgaggaggaggaggaggccggcggttc
ggagatggagggtccaggtgggatggagaggctggatccagtggaggaagaggaggatac
cagaggcattccgagtgggactcaaatgaagaacaaggacatggagggggacgaagagga
ggagacggtggtccaagaggcaaacacccaccccatctgaagggtcgagaaataggattg
tggtatgccaaatggggaggcaaacaacgagctgacgcagagagaaaatctagggctgtt
gttcaaatggatgaaacgcaagagcagcgcatcactcagttgctacacactgtccagaga
gatccaagcagagatgcacatccctctacatctcagacctggagggtgaaggaggagccc
agcggccacagttactttgatggtgaagatcctccacaacctgagaatgttatgaaagtc
tcaaaaattgagcctaaagaggaaaagcaggaagttgagttgcaggcaaatgtaaaaaag
gaaccttatgactcagacctggagtacttatcccagagtgtggtgcggaaaccctccctg
gacgaggagcttaagaatgatcagcagaagaaaagagagaagcctagataccttgaaatg
ttgaaattcagagaaaagctgccatcatatgggatgaaagaggagctggttaggctgatc
agtgctaatcaggtactggtaatcagtggagagactggttgtgggaagaccacgcaagtc
actcaattcatccttgatgactatattcagagaggcatgggctctctctgcagggtggtc
tgcacccagccacgccgcattagtgccatatctgttgcagagagagtagctgcagagcgg
gcagagtcggtgggggaggggaagtcctgtgggtatcagatccgtctacagagtcggtta
ccacggaaacaaggctcagtgttatattgtacaacgggcattattcttcagtggctccgc
tctgatccgaatctctccagcattagtcatttggtcttggatgagattcacgagaggagt
cttcaatccgatgttcttctcaccatcgtaaaggacctgttaactgctcgagatgatctc
aaagtagtcctcatgagtgccacactcaacgctgagaaattcagcagatatttcgataac
tgtcccatggtccatattcctggatacacatacccagtgcaagagtatttacttgaagat
gtggtggaaatgctaaggttccgaccgcagcaacaggactgcagacctcgctataataga
ggcttttttcatggcaagaacgtacggccggagaaagagcataaagaagctgaatacaac
gagagctggccctgctatgcccgcacactcagagaccggtactcagacagcaccattgac
gtgctggagatgatgaatgatgatgacaagatcaacctggatcttatcgtagcattgatc
cgccacattgtgatgaacgatgatgatggagcaattctagtgtttctgcctggctgggac
aacatcagcagcctgaatgatctactcacggctgaccagatgtttaaatcagatcgcttt
atcatcatcccactccactctttgatgcccacggtctctcagactcaggtgttcaaaaag
ccaccccctggagtgcgcaagattgtgatcgctaccaacatcgcagaaaccagtatcacg
atagatgatgttgtgtatgtgattgatggagggaagattaaagaaactcattttgacacc
cagaacaacatcagcaccatggctgcagagtgggtgagcttagccaatgccaaacagagg
aaaggccgcgctggcagggtatctccagggaaatgttatcacctgtataatggattgaga
gccagcctcctggataactaccagttacctgagatccaacgcaccccactggaagagctg
tgcttgcaaataaagatcctgaagttggggtccattgcgtcatttttccggaaaaatctg
gatcctccttcagagaaagcaatagagctggccatcacacatctgatggatctgaatgcc
ctggacaggaatgaagagttgactccattaggatttcatctggcccgtttgcctgtagaa
cctcacataggaaaaatgattctgtttggggctcttctgggctgtttggaccctgtgctt
accattgcagccagcctaagctttaaagaccccttctacataccactggggaaggagaag
atagcggaccacaggagaaaaatcctctccaaaaactccaggagcgatcatctcactatt
gtcaatgcatttttgggctgggaggatgcgaagagacagggcagcaggtatgagcgggag
tactgctgggaaaacttcctgtctgccagcacactacagatgcttcagaatatgaaaggt
cagtttgcagagcatctttgggcagcagggtttgtgaaaagcaaggacccgaaagatccc
agctctaacataaactcagagaatgagaagctgatcaaggcagtgattgtagcaggtttg
taccctaaagtggccaagatccgtcccaaccaaagtaagaagagaccaacgcatgtgaaa
gtatacaccaaggctgatgggaaggtttgtatccaccctaaatctgtcaatgcagaggaa
actgagttccactacacatggcttatctatcacctaaagatgaggaccaccagtatcttc
ctttatgactgcactgaggtgtccccattttcgttgctgttctttggaggagacatttcc
atacagaaggaccaagaccaagagaccattgccgtggacgagtggatcgtctttcagtcc
ccagcacgcattgctcacctcgtcaaggatctgaggaaggagctggatgtattattagag
gagaagataaagagccctcgacccgtggactggaatgactgtcaatctaaagattgtaat
gtcatctctgccatcattgacctcatcaccacacaggaaacccctgctggaggtcccagg
agaggcagccagtga
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