Massilia violaceinigra: CR152_07865
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Entry
CR152_07865 CDS
T05157
Name
(GenBank) helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mass
Massilia violaceinigra
Pathway
mass03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mass00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CR152_07865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mass03019
]
CR152_07865
03400 DNA repair and recombination proteins [BR:
mass03400
]
CR152_07865
Enzymes [BR:
mass01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CR152_07865
Messenger RNA biogenesis [BR:
mass03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CR152_07865
DNA repair and recombination proteins [BR:
mass03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CR152_07865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
Helicase_C
UvrD_C
UvrD_C_2
ResIII
DprA_WH
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ATQ74436
UniProt:
A0A2D2DHH4
LinkDB
All DBs
Position
1749158..1754305
Genome browser
AA seq
1715 aa
AA seq
DB search
MTLDLTCVPAQPEPPAAGITPRCLSVDLEVGLKDGRIHQFAAVRGDTGAAFVFTEGNFHA
ALAQLDDFADPVAFLLGHNLIAFDAPHLAAAAPYLRLLKLPMVDTLRLNPLAFPRHPYHH
LVKHYKEGQLRRGSLNDPEHDARLTLQLFADQLAALRDMQDSAPDLLLAWHWLTTGADTL
SGLNSVFMMVRRAARPGQAEASAAILRRLDGQACVSEARGVAADAPALGWALAYALAWLS
VAGASSVMPPWVRHQFPQAAQLVRRLRDSACGAADCAWCGERHDPRKELKRWFGFDAFRP
EPCDGQGRPLQEAIVDAAMRGRHVLGILPTGTGKSLCYQIPALSRYDKTGALTVVISPLV
ALMADQVSGMEARGIGCAVAINGLLSIPERAAALDRVRLGEAGIVIVSPEQLRSRALRRV
LEQREIGAWVLDEAHCISKWGHDFRPDYRYVGRFIRERAGAGDIAPVLCLTATAKPDVVA
DMLAHFRHKVGIDLTVLDGGARRVNLSFSVVPTTPAEKFAHIHQLLEAELPAHAPGGAIV
YCATKKQTEEIAAFLRQKDVSAGHFHAGLRGMVKKDTQHAFIAGELKVIVATNAFGMGID
KPDVRLVIHADIPGSLENYLQEAGRAGRDCGAARCVLLYTVEDVERQFAMSARSRLSQQD
IQVVLKAIKRLERKKHGDADIIATAGEILTEDADGDFARDSTTDDTRVRTAIAWLEEARL
LTREENQVQIFPSSLRVATLEEAEKKLAGYPLFKEKRDALLALVDALIGADADQGISTDE
LMNASGLSAEKVRAALYELEQYKIASNDTALTAFVHVAVEMSSKRLLEQACALEVALLDA
MREGAPDLAKGGASVLHLRHASQRLKDAGLAHALPDKLLRIVRSIANDGDGDDGVGSFSV
RQLDAESVQVTLQRSWNLIAGTAALRRDGAAKLLGHLAASLPASARGNDQLASTTLGQLL
AAIEGDLELAGRVKSCPRLVDRALLWLHEQGVIRLNKGMAVFRPAMTIRLAPERRGFYKA
DFAPLELHYSEQVVQIHVMAEYVQRGLQKMADALQLAMDYFSMERDRFIAQWLPARDKEL
ERQTTPASWRAIVESLDNSAQQRIVADDRERTNVLALAGPGSGKTRVLVHRIAYLVRVRR
ENPRAILVLTYNRHAAVDIRRRLAALIGRDAGGVIVLTCHALAMRLAGISFDKRLGADEE
LLKQVIPQAVALLNGTGLAPQEADEQRDRLLGAFRWILVDEYQDIGPDQYALIAALAGRN
SADEDARLSLLAVGDDDQNIYAFNGASVDFIRRFEQDYSARAAFLTENYRSTRHIIDASN
LVIAAASCRMKAAHPISIDRARAKLDAGGAWQERDPVGRGRVQIIDAGADDASQALAIMA
ELRRLAALDPDWDWAGVAVIAREWKTLEPVRTFCMLHAIPVQLANEETAQFWRLRETQAL
VRSLRADEAALVDAAAIEAWLDARPPGTWLSLLRQALQEYALETGGAELPVAHFIEWLAE
WGREARRRQTGLLLLTAHRAKGLEFDHVAVADGHWDSFGPGEDADAPRRLYYVAMTRAAR
TLVLARFAPSRGRPASLPDQLPDAPCLLRRAPLAMDATRGALRRRYLQLTLQDVDIGFAG
RMAQGDPVHRAIAALRIDDPLQLRVGKTRWELVTPAGVVVGQLARAFKPPANLRWIAGRV
AAILVRQAQDGDPEFRHLARCGEWEVVLPELVFDV
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atgacccttgaccttacctgcgtgcccgcgcagccggaaccgccagcggccggcatcacg
ccgcgctgcctgtcggtcgacctggaagtgggcctcaaggatggccgcattcaccagttc
gccgccgtgcgcggcgataccggcgccgccttcgtcttcaccgaaggcaactttcacgcg
gcgctggcgcaactcgacgacttcgccgacccggttgccttcctgctcggccacaacctg
atcgcattcgacgctccccatctggccgctgccgcgccgtacctgcgcctgctcaagctg
ccgatggtcgacacgctgcgtctcaatccgctcgcctttccgcgccatccgtaccaccac
ctggtcaagcactacaaggaaggccagctgcggcgcggcagcctgaacgaccccgaacac
gatgcgcgcctgacgctgcagctgttcgccgaccagctggccgccttgcgcgacatgcag
gacagcgcgccggacctgctgctggcctggcactggctcaccaccggcgccgataccctg
tccggactgaactcggtgttcatgatggtcaggcgcgccgcgcgcccgggccaggccgag
gccagcgccgccatcctgcgccgcctcgatggccaggcttgcgtgagcgaggcgcgcggc
gtcgccgccgacgcgcccgccctgggctgggcgctggcgtatgcgctggcgtggctctcg
gtagccggcgccagttcggtcatgccgccctgggtgcgccaccagttcccgcaggcggcg
caactggtgcggcgcctgcgcgacagcgcctgcggcgctgccgattgcgcctggtgcggc
gagcgccacgacccgcgcaaggaactcaagcgctggttcggcttcgatgccttccgcccc
gaaccgtgcgacgggcaggggcgcccgctgcaggaagcgattgtcgacgcggccatgcgc
gggcgtcacgttctcggtatcctcccgaccggtaccggcaagtcgctgtgctaccagatc
ccggcgctgtcgcgctacgacaagaccggcgcgctgacagtcgtcatctcgccgctggtg
gcgctgatggccgaccaggtgagcgggatggaagcgcgtggtatcggctgcgcggtggcg
atcaacggcctgctctcgattccggagcgggccgccgccctcgaccgggtgcgcctgggc
gaggccggcattgtcatcgtctcgcccgaacagctgcgcagccgcgccttgcggcgtgtg
ctggagcagcgcgagatcggcgcctgggtgctcgatgaagcgcattgcatctcgaaatgg
ggccacgatttccgtcccgactaccgctacgtgggccgtttcatccgcgagcgcgccggc
gccggcgacattgccccggtgctgtgcctgaccgcgaccgccaagccggatgtggtggcc
gacatgctggcgcacttccgccacaaggtcggcatcgacctgaccgtgctcgatggcggt
gccaggcgggtcaacctgtcgttctcggtggtgccgaccaccccggccgaaaaattcgcg
cacatccaccagttgctggaagccgaactgcccgcgcacgcgcccggcggcgcgatcgtc
tactgcgccaccaaaaagcagaccgaggaaatcgccgctttcctgcgccagaaagacgtg
agcgcggggcacttccatgcgggcctgcgtggcatggtcaagaaagacacccagcacgcc
ttcatcgccggtgagctcaaggtcatcgtcgccacgaacgccttcggcatggggatcgac
aagccggacgtgcgcctggtgatccatgccgacattcccggctcgctcgaaaactacctg
caggaagccgggcgcgccgggcgcgattgcggcgccgcccgctgcgtgctgctgtacacg
gtggaggatgtggagcgccagttcgccatgtcggcgcgctcgcgcctgtcgcaacaggat
attcaggtggtgctcaaggcgatcaagcgcctggagcgcaaaaaacacggcgacgccgac
atcatcgccacggccggcgaaatcctgaccgaagacgccgacggcgacttcgcgcgcgac
tccaccaccgacgacacccgcgtgcgcaccgccatcgcctggctggaagaagccaggctg
ctcacgcgcgaggaaaaccaggtacagatattcccgtcctcgctacgtgtggctaccctg
gaagaagccgaaaaaaagctggccgggtatccgctcttcaaggaaaaacgcgacgccttg
ctggcgctggtggatgccctgatcggcgccgatgccgatcagggcatctccaccgacgaa
ttgatgaacgcctccggcctgtcggccgagaaggtgcgcgccgcgctgtatgagctggaa
cagtacaagatcgccagcaacgacacggcgctgaccgccttcgttcacgtggccgtagag
atgtcgtcgaaacgcttgctcgagcaagcctgcgcactcgaggtggcgctgctcgacgcc
atgcgcgaaggcgcgcccgacctggccaagggcggcgcctcggtgctgcacctgcgccac
gccagccagcgcctgaaagacgccggcctggcgcatgccttgcccgacaagctgctgcgc
atcgtgcgcagcatcgccaacgacggcgatggcgacgatggcgtgggcagcttcagcgtg
cgccagctcgacgccgagagcgtgcaggtcaccttgcagcgcagctggaacctcatcgcc
ggcaccgccgccctgcggcgcgacggcgccgccaagctgctcgggcacctggccgccagc
ctgccggccagcgcacgcggcaacgaccagctggccagtaccaccctcggccagctgctc
gccgcgatcgagggtgacctggaactggcgggccgggtgaaatcctgtcccaggctggtc
gaccgcgccctgctgtggcttcacgaacagggcgtgatccgcctgaacaaggggatggcc
gtgtttcgccccgccatgacgatccgtcttgcgcccgagcggcgcggcttctacaaggcc
gacttcgcgccgctggaactgcactacagcgaacaggtggtgcagattcacgtgatggcc
gaatacgtgcagcgcggcctgcaaaagatggcggacgccctgcaactggcgatggattac
ttcagcatggagcgcgaccggttcatcgcgcaatggctgcccgcgcgcgacaaggaactg
gagcgccagaccacgccggcctcgtggcgcgcgattgtcgaaagcctcgacaacagcgcc
cagcagcgcatcgtggccgacgaccgcgaacgcaccaatgtgctggcgctggccggcccc
ggatcgggcaagacgcgcgtgctggtgcaccgcatcgcttatctggtgcgggtgcggcgc
gaaaatccgcgcgccatcctggtactgacctataaccgccacgccgcggtcgacatccgg
cgccggctcgccgccctgatcgggcgcgacgccggcggcgtgatcgtgctgacctgccac
gcgctggcgatgcggctcgccggcatcagcttcgacaagcgccttggcgccgacgaggag
ctgctcaagcaagtcattccgcaggcggtggccttgttgaacgggaccggcctcgcgccg
caggaagcggacgaacagcgcgaccgcctgctcggcgccttccgctggatactggtcgac
gagtaccaggacatcgggccggaccagtacgcgctcattgcggcgctggcggggcgcaac
agcgccgacgaggatgcgcggctgagcctgctcgcggtcggcgacgacgaccagaacatc
tacgctttcaacggcgcctcggtcgacttcatccgccgcttcgaacaggactacagcgcc
agagcggcgttcctgaccgagaattaccgctcgacgcgacacatcatcgatgcgtccaac
ctggtgattgcggcggccagctgccgcatgaaagccgcgcacccgatcagcatcgaccgc
gcgcgcgccaagcttgacgcgggtggcgcatggcaggagcgcgatccggtcggccggggc
cgcgtgcagatcatcgatgccggcgccgacgatgccagccaggcgctggccatcatggcc
gagctgcgccgcctggccgcgctggacccggactgggactgggcgggcgtggcggtcatc
gcgcgcgagtggaaaaccctggagccggtgcgcaccttctgcatgctgcatgccatcccg
gtgcagttggccaatgaagaaaccgcgcagttctggcgcctgcgtgaaacccaggcgttg
gtgcgctcgctgcgcgcggacgaggcggcactggtcgatgcggccgccatcgaggcctgg
ctcgatgcccggccgcccggcacctggctcagtctcctgcgccaggcgctccaggagtac
gcgctggagacgggcggcgccgaactgccggtggcgcacttcatcgagtggctggccgaa
tggggccgcgaagcgcgccggcgccagaccggtttgctgctgctgacggcgcaccgcgcc
aaggggctcgagttcgaccacgtcgccgtggccgacggccactgggacagcttcggtccc
ggtgaagacgccgatgcgccgcgccgcctgtactacgtggccatgacgcgggcggccagg
acgctggtcctggcgcgctttgcgccctcgcgcggccggccggccagcctgcccgaccaa
ctgccggacgcgccatgcctgctgcgccgcgcgccgctggcgatggacgccacccggggc
gccttgcggcggcgctatctgcagctcacgctgcaggatgtcgacatcggtttcgccggc
cggatggcgcagggcgacccggtccaccgcgccattgccgcgctgcgcatcgacgacccg
ctgcagctgcgcgttggcaaaaccaggtgggaactggtcacgcccgccggcgtggtggtg
gggcaactggccagggcgttcaagccgccagccaatctgcgctggatcgcgggccgcgtg
gcggccatcctggtgcgccaggcgcaggacggcgatcccgagttccgccacctggcccgt
tgcggcgagtgggaggtggtgctgcccgaactggtcttcgacgtttga
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