Massilia violaceinigra: CR152_13165
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Entry
CR152_13165 CDS
T05157
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mass
Massilia violaceinigra
Pathway
mass03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mass00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CR152_13165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mass03019
]
CR152_13165
Enzymes [BR:
mass01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CR152_13165
Messenger RNA biogenesis [BR:
mass03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CR152_13165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
HNF-1_N
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ATQ75360
UniProt:
A0A2D2DK46
LinkDB
All DBs
Position
2906100..2907632
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AA seq
510 aa
AA seq
DB search
MSETPITIEADSEPTVKFADFGLAPEILRALTDQGYIHPTPIQAKAIPIVLQGRDVMGAA
QTGTGKTASFSLPIIQLLLAHASPSMSPARHPVRALVLTPTRELAVQVAENVKAYAQHTP
LRSTVVFGGMDMKGQTIILKGGVEIVIATPGRLLDHIEQKNVSLGQVQMLVMDEADRMLD
MGFLPDLQRIINLLPKKRQNLMFSATFSPEIKKLANSFLTDPVTIEVARSNATADKVTQI
VYKVADEAKRDVVEFLIRGRDLKQVLVFSNTKIGASRLSRHLEQGGIKATAIHGDKTQQE
RMGALDAFKKGEIDVLVATDVAARGLDISDLPCVINFDLPYNAEDYVHRIGRTGRAGASG
DALSVFSDKDERLLVDIEKLIKQTITRGELAGFVASASASAGRFDASGERRPRRDDSSAG
SSAGRPSGRPPERERSGERSSSSERSSERTSTSSSSSRPGPYPRREKVDPWFLTPYEPAK
KNTPVVADQVATSTKPKQKIAVLLGGSPKQ
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaacaccgattaccatcgaagccgacagtgaacccaccgtcaagtttgccgat
ttcggccttgcgcctgagatcctgcgcgcactgacggaccagggctacatccacccgacg
ccgatccaggccaaggccattccgatcgtcctgcaggggcgcgacgtcatgggcgcggcc
cagaccggcaccggcaagaccgccagtttttcgctgcccatcatccagctgctgctggcc
cacgccagcccgagcatgtcgccggcgcgccatccggtgcgcgccctggtcctgaccccc
acgcgcgagctggcggtgcaggtggccgagaacgtcaaggcttacgcccagcacaccccg
ctgcgctcgaccgtggtgttcggcggcatggacatgaagggccagaccatcatcctcaag
ggtggggtcgaaatcgtcatcgccaccccgggccgcctgctcgaccatatcgaacagaaa
aacgtcagcctgggccaggtgcagatgctggtcatggatgaagccgaccgcatgctcgac
atgggcttcctgccggacttgcagcgcatcatcaacctgctgccgaaaaagcgccagaac
ctgatgttctcggccaccttctcgccggaaatcaagaagctggccaacagcttcctgacc
gatccagtgaccatcgaagtggcgcgcagcaacgccaccgccgacaaggtgacccagatc
gtctacaaggtcgccgacgaagccaagcgcgacgtggtcgaattcctcatccgcggacgc
gacctcaagcaggtgctggtgttctcgaacaccaagatcggcgcttcgcgcctgtcgcgc
cacctggagcagggcggcatcaaggccaccgcgattcacggcgacaagacccagcaggaa
cgcatgggcgcgctcgacgccttcaagaagggcgagatcgacgtgctggtcgccaccgac
gtggccgcgcgcgggctcgacatttccgacctgccgtgcgtgatcaacttcgacctgccg
tacaacgccgaagattatgtgcaccggatcggccgcaccggccgcgccggcgcctcgggc
gatgcgctgtcggtgttttcggacaaggacgagcgcttgctggtcgatatcgaaaaactg
atcaagcaaacgatcacgcgcggcgaactggccggcttcgtggccagcgccagcgccagc
gcagggcgcttcgatgcctcgggcgagcgccgtccgcgccgcgacgacagcagcgccggc
agcagcgccggccgtccgtccgggcgcccgccggagcgcgaacgcagtggcgagcgcagc
agcagtagcgagcgcagttccgaacgcacttccaccagcagttcctcgagccgcccgggc
ccgtatccgcgccgcgagaaggtcgatccctggttcctgactccgtacgagccggccaag
aagaacacgccggtcgtcgccgaccaggttgccaccagcaccaagcccaagcagaagatt
gccgtgctgctcggcggttcgcccaagcagtaa
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