Massilia violaceinigra: CR152_15230
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Entry
CR152_15230 CDS
T05157
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mass
Massilia violaceinigra
Brite
KEGG Orthology (KO) [BR:
mass00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mass03019
]
CR152_15230 (hrpA)
Enzymes [BR:
mass01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CR152_15230 (hrpA)
Messenger RNA biogenesis [BR:
mass03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CR152_15230 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
AAA_30
SpoIIE
SRP54
TsaE
Motif
Other DBs
NCBI-ProteinID:
ATQ78910
UniProt:
A0A2D2DV97
LinkDB
All DBs
Position
3385839..3389846
Genome browser
AA seq
1335 aa
AA seq
DB search
MAGERPARAPRPPREGQAAGERAPREGQPAGERPQRAPREVFRTPLPPITFPEDLPVSGR
RQDIAKALLENQVIIVSGETGSGKTTQLPKICLELGRGQKGLIGHTQPRRIAASSTAKRI
AQELGTPLGVHVGFKVRFTDTLQPGASVKLMTDGILLAETQTDPLLKNYDTIIIDEAHER
SLNIDFLLGYLKQLLPRRPDLKVIITSATIDADRFARHFANGDKLAPVIEVSGRLYKVEV
RYRPVDRDPVAVAPPVASGKPIPKAQAARDKRDLMDAVVDGVDELCRLGSGDVLVFLPGE
REIRDCAEALRKHHPPHVEILPLFARLSVEEQEKVFKITNARRIVLATNVAETSLTVPGI
RYVVDAGLARVKRYSFRNKVEQLQVEPIAQSAANQRAGRCGRVADGVCIRLYEENDYLQR
PKFTEPEILRSSLAAVILRMKSLHLTDVETFPFIEPPQGRAIADGYQLLQEVGAVDESND
LTPLGHKLAKLPLDPRVGRMILAALENACLTEMLIIASALSVQDPRDRPMEHQQAADEAH
KKFADEKSEFLTYIKIWTWFEAAIEHKKTNRQLMETCRTNFLSQVRLREWRDVHSQLLTI
VKEQGWRMNELPATYENLHTALLTGLLGNIGFKSEDEPGAGYLGARGIKYHVWPGSSLIK
KPGKWIMAAELVETTRLYARCVANIAPEWIERVGSHLLKKSWGEPRWEKRAAQVTASERA
TLHGLVIYSQRRINYGQFNPAEAREIFIRDALVAGDYDTRAPFFAHNHKLIKEIENLEHK
SRRLDVLVDDHLIAAFYDKLIPTDVVNGAGFEKWHKDATFKEPKLLFLNRDELMRHEAAG
VTTELFPKVMSVTGIEMQLTYHFEPGSLRDGVTLAVPLFALNQLPRERADWLVPGMLKEK
VHLLLKSLPQKLRRHCVPLPDYAARFCERVHEAGKFGRGDLIDAIIADIRSQTSLMVMTT
DFKPETLPAHHFMNFKVIDEHGRQLDMGRNLATLQAEFGGQARQSFQKLAEVSIPAAPGK
VQATATTSASAAAPAAASSAATASQPNAPKVSQHTGLTSWTFGELPELLEIVQGKLTLIG
FPALVDKQTHCDLEVFDDPTVAAATHRIGLRRLFALQFKEQIKFVEKNIPGLQQMGMQFM
AMGSQEELRDQIIQKAIDIACLQDPLPTDAASFNKRKEEGKSRLTLLVNEIARLVSQVLT
EFHGLPKKLQGVQAQAAADMQSQLQGLVHKRFLIDNDYAQLAHFPRYLKAINVRLEKLRA
DPARDAKLMAEWTQSASHFMRAARDRLAGKNTDPKMVEFRWMLEELRVSLYAQELRTPMP
VSAKRLQKVWESMQR
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
ctggccggcgaacgtccggcgcgcgccccgcgtccaccgcgcgaaggtcaggcagccggt
gaacgtgcgccacgcgaaggtcagccagcgggcgaacgtccgcagcgcgcgccgcgcgaa
gtatttcgcacgcctctgccgccgattacctttcccgaagacctgccggtctccgggcgc
cgccaggacatcgccaaggcgctgctggagaaccaggtcatcatcgtttccggcgaaacc
ggttccggcaaaaccacccagctgcccaagatctgcctggagctgggacgcggccagaag
ggcctgatcggccacacccagccgcgccggatcgccgcgtcgtccaccgccaagcgcatc
gcgcaggaactgggcacgccgctgggcgtgcacgtgggcttcaaggtgcgctttaccgac
accttgcagccgggtgcctcggtcaagctgatgacggacgggatcctgctggccgaaacc
cagaccgacccgctgctcaaaaactacgacaccatcatcatcgatgaagcgcacgagcgc
agcctgaacatcgatttcctgcttggttacctcaagcagctgctgccgcgccgtcccgac
ctgaaagtgatcatcacctcggcaacgatcgatgccgaccgcttcgcgcgccacttcgcc
aacggcgacaagctggcgccggtgatcgaagtgtcgggccgcctgtacaaggtggaagtg
cgctatcgcccggtcgaccgcgatccggtggcggtggcgccgccagtggcgtcgggcaaa
ccgattccgaaggcgcaggccgcgcgcgacaagcgtgacctgatggacgccgtggtcgat
ggcgtcgacgaattgtgccgcctcggttcgggcgacgtgctggtgttcctgccgggtgag
cgcgaaattcgcgattgcgccgaagccctgcgcaagcaccatccgccgcacgtcgaaatc
ctgccgctgttcgcccgcctgtcggtcgaggagcaggagaaggtcttcaagatcaccaat
gcgcgccgcatcgtgttggccaccaacgtggccgagacttcgctgacggtgccgggcatc
cgctacgtggtcgacgccggccttgcgcgcgtgaagcgctacagcttccgcaacaaggtc
gagcaattgcaggtggagccgatcgcgcagtcggccgccaaccagcgcgccggccgttgc
ggccgggtggccgacggcgtctgcatccgcctgtacgaagaaaacgattacctgcagcgc
cccaagttcaccgagccggaaatcctgcgctcgtcgctggcggcggtcatcctgcgcatg
aagtccctgcacctgacggatgtggagacgttcccgttcatcgagccgccgcagggccgc
gcgatcgccgacggctaccagctgctgcaggaagtgggcgcggtcgacgaatcgaacgac
ctgaccccgctcggccacaagctggccaagctgccgctcgatccaagggtcgggcgcatg
attctggccgcgctggaaaacgcctgcctgaccgagatgctgatcatcgcctcggcgctg
tcggtgcaggatccgcgcgaccggccgatggagcaccagcaggctgccgacgaggcgcac
aagaagttcgccgacgagaagtccgagttcctcacctatatcaagatttggacgtggttc
gaggcggccatcgagcacaagaaaaccaaccgccagctgatggaaacctgccgcaccaat
ttcctctcgcaggtgcgcctgcgcgaatggcgcgacgtgcattcgcagctgctcaccatc
gtcaaggagcagggctggcgcatgaacgagctgccggccacgtacgaaaacctgcatacg
gccctgctcactggcctgctgggcaatatcggcttcaagtccgaggatgaaccgggcgcc
ggctacctgggcgcgcgcggcatcaagtaccacgtgtggccgggttcctcgctcattaaa
aagccgggcaagtggatcatggcggccgaactggtggaaaccacgcgcctgtacgcgcgc
tgtgtggccaacatcgcacccgaatggatcgagcgggtgggcagccacctgctgaaaaaa
tcgtggggcgagccgcgctgggaaaagcgcgccgcgcaggtcaccgcatccgaacgcgcg
accctgcacgggctggtgatctacagccagcgccgcatcaactacggtcagttcaatccg
gccgaagcgcgcgagatcttcattcgcgatgcgctggtggcgggcgactacgatacgcgc
gcgccgttctttgcgcataaccacaagctgatcaaagagatcgaaaacctcgagcacaag
tcgcgccgtctcgacgtgctggtcgacgaccatctgatcgccgccttctacgacaagctc
attccgaccgatgtggtcaacggcgccggcttcgagaagtggcacaaggacgccaccttc
aaggaacccaagctgctgttcctgaaccgcgacgaattgatgcggcacgaagcggctggc
gtcaccaccgagttgttcccgaaggtgatgtcggtgaccggcatcgaaatgcagctcacc
taccacttcgagccgggcagcctgcgcgacggcgttaccctggcggtgccgctgtttgcg
ctgaaccagctgccgcgcgagcgcgcggactggctggtgccgggcatgctgaaggagaag
gtgcatctgcttttaaaatcgctgccgcagaagctgcgccgccattgcgtgccgctgccc
gattacgcggcgcgcttttgcgaacgcgtgcacgaggcgggcaagttcgggcgcggtgac
ctgatcgatgccatcatcgccgacatccgctcgcaaacgagcctgatggtgatgacgacc
gacttcaagcccgaaacgctgccggcccaccattttatgaacttcaaggtgatcgacgag
cacggacgccagctcgacatggggcgcaacctggcgaccttgcaggccgaattcggcggg
caggcgcgccagagcttccagaagctggcggaggtgtcgattccggcggcgccgggcaag
gtccaggcgacggccacgacttcggcctcggccgctgcgccggcggcagcatcgtcggcg
gccacggcgtcgcaaccgaatgcgcccaaggtcagccagcacaccggcctgacctcgtgg
accttcggcgaattgccggagctgctggaaatcgtgcagggcaagctgaccctgatcggc
tttccggcgctggtggacaagcagacccactgcgacctggaagtgttcgacgatccgacc
gtggctgccgccacccaccgcatcggcctgcgccgcctgttcgcgctgcagttcaaggag
cagatcaagtttgtcgagaagaacattccgggtttgcagcagatgggcatgcagttcatg
gcgatgggctcgcaggaagagttgcgcgaccagatcatccagaaagcgatcgacatcgcc
tgcctgcaagacccgctgccgaccgacgcggcttcgttcaacaagcgcaaggaggaaggc
aagtcgcgcctgaccttgctggtgaacgagattgcacgcctggtgtcgcaggtgttgacc
gagttccacggcttgcccaagaagctgcagggcgtgcaggcgcaggccgcggccgacatg
cagtcgcagttgcagggactggtgcacaagcgcttcctgatcgataacgattatgcgcag
ctggcgcattttccgcgctatctgaaggcgatcaatgtgcggctggaaaagctgcgtgcc
gatcccgcgcgcgacgccaagctgatggccgagtggacccagtccgccagccatttcatg
cgcgccgcgcgcgaccggctggcgggaaaaaacaccgatccgaagatggtggaatttcgc
tggatgctcgaagagctgcgcgtgtcgctgtatgcgcaggaattgcgcacgccaatgccg
gtgtcggccaagcgcctgcagaaggtgtgggagtcgatgcagcgctga
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