Massilia sp. WG5: AM586_02400
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Entry
AM586_02400 CDS
T04122
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
masw
Massilia sp. WG5
Pathway
masw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
masw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AM586_02400 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
masw03021
]
AM586_02400 (rpoB)
03400 DNA repair and recombination proteins [BR:
masw03400
]
AM586_02400 (rpoB)
Enzymes [BR:
masw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AM586_02400 (rpoB)
Transcription machinery [BR:
masw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AM586_02400 (rpoB)
DNA repair and recombination proteins [BR:
masw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AM586_02400 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RnfC_N
DNAPolymera_Pol
Motif
Other DBs
NCBI-ProteinID:
ALK95309
LinkDB
All DBs
Position
3698682..3702791
Genome browser
AA seq
1369 aa
AA seq
DB search
MHYSFTEKKRIRKSFAKRANVHNVPYLLATQLESYENFLQADATPSVRKNEGLQSAFSSI
FPIVSHNGFARLEFLSYVLGDPAFDVKECQQRGLTFASPLRAKVRLVILDKESPTKPVVK
EMKEQEVYMGELPLMTANGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILLKAIGMTPEQILANFFVFDNFNLRSE
GAELEFVAERLRGEVARFDIVDPKSGKTLVQKDKRINAKHVRDIEAAGITYISVPEDYLV
GRVLATNVVDGDTGEIIASANDELTDELLGKLRDANISAIQTLYTNDLDQGAYISQTLRT
DDTADQTAARVAIYRMMRPGEPPTEESVEALFNGLFYMPERYDLSAVGRMKFNRRIGRDE
LVGDMTLSNEDILAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVER
AVKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRK
VDGSKVTDKIEYLSAIEEGRYIIAQANAAINAEGQLVDELVSAREAGETILVSPERIQYM
DVAPGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKAFVGTGIERTVAVDSG
TTVQATRGGLVDYVDAGRVVIRVNDDEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIVKV
GDRVARGDVIADGASTDLGELALGQNMLVAFMPWNGLNFEDSILISENVVKDDRYTSIHI
EELSVVARDTKLGPEEITRDISNLAENQLARLDESGIVYIGAEVQAGDVLVGKVTPKGET
QLTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIVRDKRAQQIIDDEL
KRFRLDLNDQLRIVEGDAFQRLERLLVNKTVNGGPKKLSKGAVITKEYLADLDKFHWFDI
RPADDETANALEAMKESINEKRHQFDLAFEEKRKKLTQGDELQPGVQKMVKVYLAVKRRL
QSGDKMAGRHGNKGVVSRIVPVEDMPFMADGTPADVVLNPLGVPSRMNVGQILETHLGWA
AKGLGLRLGEMIKAKAQTEQLRAFLGKIYNETGKKEDLDNFSDEEIVELAHNLKNGVPFA
TPVFDGAHEDEIRRMLDLAFPDEIAAHLGMTPSKNQVTMYDGRTGEAFERKVTVGFMHML
KLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTV
KSDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERS
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgcactactcatttactgagaagaaacgcattcgcaagtcgttcgcgaagcgcgccaac
gttcacaacgttccctatctcctggctactcagctggagtcctacgagaatttcctgcaa
gcggacgcaaccccttccgtgcgcaagaatgaaggcctgcagtcggccttcagctccatc
ttcccgatcgtgtcgcacaacggttttgcgcgcctcgagttcctctcatacgtgctgggt
gaccccgctttcgacgtcaaggaatgccaacaacgcggtctgaccttcgcgtcgccgctg
cgcgccaaggtgcgcctggtgatcctggacaaggaatccccgaccaagccggtcgtgaag
gaaatgaaggaacaggaagtgtacatgggcgaactgccgctcatgaccgccaacggctcg
ttcgtgatcaacggtaccgagcgcgtgatcgtctcgcagctgcaccgctcgccgggcgtg
ttcttcgagcacgaccgcggcaagacccactcctcgggcaagctgctgttctcggcacgt
atcattccttaccgtggctcgtggctggacttcgagttcgacccgaaggacatcctgttc
ttccgcgtcgaccgccgccgcaagatgccggtgacgatcctgctgaaagccatcggcatg
acgccggagcagatcctcgccaacttcttcgtgttcgataacttcaacctgcgctcggaa
ggcgcggagctggaattcgtggccgagcgcctgcgcggcgaagtcgcgcgcttcgacatc
gtcgatccgaagtcgggcaagaccctggtgcagaaggacaagcgcatcaacgccaagcac
gtgcgtgacatcgaagccgccggcatcacctatatctcggtgccggaagactacctggtc
ggccgcgtgctggccaccaacgtggtcgacggcgacaccggcgagatcatcgccagcgcc
aacgacgagctgaccgacgagctgctgggcaagctgcgcgacgccaacatttcggcgatc
cagaccctgtacaccaacgacctggaccagggcgcctacatctcgcagaccctgcgtacc
gacgacaccgccgaccagaccgccgcacgcgtggcgatctaccgcatgatgcgtcctggc
gagccgccgaccgaagaatcggtcgaagcgctgttcaacggcctgttctacatgccggaa
cgctacgacctgtcggccgtcggccgcatgaagttcaaccgccgcatcggccgtgacgaa
ctggtcggcgacatgacgctgtcgaacgaagacatcctggccgtgatcaagatcctggtc
gagctgcgcaatggccgcggcgaagtcgacgacatcgaccacctgggtaaccgccgcgtg
cgctgcgtgggcgaactggccgaaaaccagttccgcgccggcctcgtgcgcgtcgagcgc
gccgtcaaggagcgcctgggccaggccgaagccgacaacctgatgccgcacgacctgatc
aacagcaagccgatctcggccgcgatccgcgaattcttcggttcgtcgcagctgtcgcag
ttcatggaccagaccaacccgctgtcggaaatcacgcacaagcgccgtgtttccgcactg
ggcccgggcggcctgacccgcgaacgcgccggcttcgaagtgcgcgacgtgcacccgacc
cactacggccgcgtgtgcccgatcgaaacgcctgaaggcccgaacatcggcctgatcaac
tcgctggcactgtacgcccgcctgaacgaatacggcttcctggaaaccccgtaccgcaag
gtcgacggttcgaaagtcaccgacaagatcgaatacctgtcggcgatcgaagaaggccgc
tacatcatcgcccaggcaaacgccgcgatcaacgcggaaggccagctggtcgacgaactg
gtgtcggcgcgtgaagccggtgaaaccatcctggtctcgccggaacgcatccagtacatg
gacgtggccccgggccaggtcgtgtcggtggcagcgtcgctgattccgttcctcgagcac
gatgacgcgaaccgtgcactgatgggcgccaacatgcagcgccaggccgtgccttgcctg
cgtccggaaaaagccttcgtcggtaccggcatcgagcgcaccgtggcggtcgactcgggc
accaccgtgcaggccacccgtggcggcctggtcgactacgtcgacgccggccgtgtggtg
atccgcgtgaacgacgacgaggcgcaagccggcgaagtcggtgtggacatctacaacctg
atcaagtacacccgttcgaaccagaacaccaacatcaaccagcgtccgatcgtgaaagtg
ggcgaccgcgtcgcgcgcggcgacgtcatcgccgacggcgcatcgaccgacctgggcgaa
ctggcactgggccagaacatgctggtggcgttcatgccgtggaacggcttgaacttcgag
gactcgatcctcatctcggagaatgtcgtcaaggacgaccgctacacctcgatccacatc
gaggaactgtcggtggttgcccgcgacaccaagctgggccctgaagaaatcacccgcgac
atctcgaacctggcggagaaccagctggctcgcctggacgagtcgggcatcgtctacatc
ggcgccgaagtgcaggccggcgacgtgctggtcggtaaggtcaccccgaaaggcgagacc
cagctgaccccggaagagaagctgctgcgcgcgatcttcggcgaaaaagcgtccgacgtg
aaggacacctcgctgcgcgtgccgtcgggcatggtcggtaccgtgatcgacgtgcaagtc
ttcacccgtgaaggcatcgtccgcgacaagcgcgcccagcagatcatcgacgacgagctg
aagcgcttccgcctggacctgaacgaccagctgcgcatcgtcgaaggcgacgccttccag
cgtctggaacgcctgctggtcaacaagaccgtgaacggcggtccgaagaagctgtccaag
ggcgccgtgatcaccaaggaatacctggctgatctggacaagttccactggttcgacatc
cgtccggccgacgacgaaaccgccaacgcactggaggcgatgaaggagtcgatcaacgag
aagcgtcaccagttcgacctggccttcgaagagaagcgcaagaagctgacccagggcgac
gagctgcagccgggcgtgcagaagatggtcaaggtctacctggccgtcaagcgccgcctg
cagtcgggcgacaagatggcgggccgccacggtaacaagggtgtggtctcgcgtatcgtg
ccggtggaagacatgccgttcatggccgatggtaccccggccgacgtcgtgctgaacccg
ctgggcgtcccgtcgcgtatgaacgtcggtcagatcctcgaaacccacctcggttgggcg
gcgaagggcctgggcctgcgtctcggcgaaatgatcaaggccaaggcacagaccgagcag
ctgcgcgccttcctgggcaagatctacaacgagaccggcaagaaggaagacctggacaac
ttcagcgatgaagagatcgttgaactggcgcacaacctgaagaacggcgtgccgttcgcg
accccggtgttcgacggcgcccacgaagacgagatccgccgcatgctggacctggcgttc
ccggacgagatcgctgcccacctgggcatgaccccgtcgaagaaccaggtcacgatgtac
gacggccgcaccggcgaagcattcgagcgcaaggtcaccgtcggcttcatgcacatgctg
aagctgcaccacctggtcgacgacaagatgcacgcccgttcgaccggcccgtactcgctg
gtgacccagcagccgctgggcggcaaggcgcagttcggtggccagcgcttcggtgagatg
gaggtgtgggcactggaagcctacggcgcgtcgtacgtgctgcaggaaatgctgaccgtg
aagtcggacgacgtgaacggccgtaccaaggtgtacgagaacctggtcaagggcgaccac
gtgatcgacgcaggtatgccggaatcgttcaacgtgctggtgaaagagatccgttcgctg
ggtatcgacatcgacctcgagcgcagctaa
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integrated database retrieval system
