KEGG   Massilia sp. WG5: AM586_02405
Entry
AM586_02405       CDS       T04122                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
masw  Massilia sp. WG5
Pathway
masw03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:masw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AM586_02405
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:masw03021]
    AM586_02405
   03400 DNA repair and recombination proteins [BR:masw03400]
    AM586_02405
Enzymes [BR:masw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AM586_02405
Transcription machinery [BR:masw03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AM586_02405
DNA repair and recombination proteins [BR:masw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AM586_02405
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C Myosin_VII_N
Other DBs
NCBI-ProteinID: ALK95310
LinkDB
Position
3702899..3707146
AA seq 1415 aa
MKALLDLFKQVQQNESFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFTAFM
GAEGIRELLRSIDIDREAEALRVELKESKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEQQEPVVWDILEEVIKEHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINAKGEGMLFPDVSEVLRAYDNK
EVELATRITVRIVEFPKNEQGGFDQTLTRYETTVGRAILSEILPKGLPFSVLNRALKKKE
ISKLINTSFRKCGLRATVVFADKLMQSGFRLATRAGISIAVDDMLIPDVKKSMIATAEAE
VKQIEQQYASGLVTAGERYNKVVDIWGKTSDEVGKAMMDQLKVEPVVKRDGTHGTQESFN
AIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTTNGTHMKAMVEGGEVIEPLRDRIL
GRVAGTDIVNPETQETLFEAGTLLDEDMVEEIERVGIDEVKVRTPLNCDTRYGLCAKCYG
RDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVRF
TATMRYVTNGKGAQIVISRSGEVLITDDHGRERERHKVPYGATLAVHDGMVVKAGLPLAT
WDPLTRPIITEYGGTIKFENVEEGVTVARQVDEVTGLSTLVAIDPKRRGSGKTLRPQVKL
LNEEGQEVKIAGTEHAVTIGFQVGALIMVKDGQQASVGEVLARIPTESQKTRDITGGLPR
VAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVHDG
QVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQML
RRVQIVEAGDTDYIVGEQVERSELLEANDRIEAAGKLPATYENVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPGGTGLAFHRARKEKEAWEAEERQ
QLLQQEKANMAAELQAMEDQQQAAASIEQHHGDGE
NT seq 4248 nt   +upstreamnt  +downstreamnt
atgaaagcactgctcgatctattcaagcaagttcagcaaaacgagagcttcgacgccatc
aagattggcctggcgtcgcccgagaaaatccgttcgtggtcgtacggcgaagtcaagaag
ccggagaccatcaactaccgtacgttcaagccggagcgtgacggcctgttctgcgccaag
atctttggtccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtcatctgcgagaagtgcggcgtcgaagtcaccctggcgaaagtgcgccgtgag
cgcatgggccacatcgagctggcctcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtcctggacatgaccctgcgcgacatcgagcgcgtcctgtac
ttcgaagcatacgtcgtgaccgatccgggcatgaccccgctgaagaagtgccagatcatg
tcggaagacgactacgccgccaagtacgaagagtacggcgacgacttcaccgcattcatg
ggcgccgaaggcatccgtgaactgctgcgctcgatcgacatcgaccgcgaagccgaagcg
ctgcgcgtcgaactgaaagagtcgaagtcggaagcgaagatcaagaaatacgccaagcgc
ctgaaagtgctcgaggcattccagcgttcgggcatcaagccggactggatgatcatggaa
gtgctcccggtcctgccgccggagctgcgtccgctcgtcccgctggacggcggccgtttc
gcgacctccgacctgaacgacctgtatcgccgcgtcatcaaccgtaataaccgcctgaag
cgcctgatggaactgcgcgcgccggaaatcattacgcgtaacgagaagcgcatgctgcag
gaagcggtggactcgctgctggacaacggccgtcgcggcaaagcgatgaccggcgccaac
aagcgtccgctgaagtcgctggctgaaatgatcaagggtaagggcggccgcttccgtcag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggtccgcag
ctgaaactgcaccagtgcggcctgccgaagctgatggccctggaactgttcaagcccttc
atcttcaacaagctggaactgatgggtctcgcgaccaccatcaaggctgcgaagaagctg
gtcgagcagcaggaaccggtggtctgggacatcctggaagaagtcatcaaagagcacccg
gtcatgctgaaccgtgcgccgaccctgcaccgtctgggtatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagctgcacccgctggtctgcgcggcgttcaacgccgac
ttcgacggtgaccagatggcagtccacgtcccgctgtcgatcgaagcgcagatggaagcc
cgcaccctgatgctggcctcgaacaacatcctgttcccgtcgaacggcgagccgtcgatc
gtcccgtcgcaggatatcgtgctgggtctgtactacgcgacccgcgaagcgatcaacgcc
aagggcgagggcatgctgttcccggacgtgtcggaagtcctccgcgcgtacgacaacaag
gaagtcgaactggcgacccgcatcaccgtgcgtatcgtcgagttcccgaagaacgagcag
ggcggtttcgaccagaccctgacccgctacgagaccacggtcggccgtgcgatcctgtcc
gagatcctgccgaaaggcctgccgttctcggtgctgaaccgcgcgctgaagaagaaagag
atctcgaagctgatcaacacgtcgttccgcaagtgcggcctgcgtgcgaccgtcgtgttt
gccgacaagctgatgcagtcgggcttccgcctggcgacccgcgccggtatctcgatcgcc
gtggacgacatgctgatcccggacgtcaagaagtccatgatcgcgaccgccgaagcggaa
gtgaagcagatcgagcagcagtacgcttcgggtctggtcaccgccggcgagcgttacaac
aaggtcgtcgacatctggggcaagacctcggacgaagtcggcaaggcgatgatggaccag
ctgaaggtggaaccggtcgtcaagcgcgacggcacccacggcacccaggaatcgttcaac
gcgatttacatgatggccgactcgggcgcccgtggttcggcagcccagatccgtcagctg
gccggtatgcgaggcctgatggcgaagccggacggttcgattatcgaaacgccgattacc
gcgaacttccgcgaaggcctgaacgttctgcagtacttcatctcgacgcacggcgcccgt
aagggtctggccgacaccgcgctgaagaccgcgaactcgggttacctgacccgccgcctg
gtcgacgtgacccaggatctggtggtgatcgaggacgattgcggcaccaccaacggcacg
cacatgaaggcgatggtcgaaggcggtgaagtgatcgagccgctgcgcgaccgtatcctc
ggccgtgtcgcgggtaccgacatcgtcaacccggaaacccaggaaaccctgttcgaagcc
ggcacgctgctggatgaagacatggtcgaagagatcgagcgcgtcggtatcgacgaagtg
aaggtccgcaccccgctgaactgcgacacccgttatggcctgtgcgcgaagtgctacggc
cgtgacctgggccgcggcctgctggtgaacagcggcgaagccgtcggtgtggtcgctgca
cagtcgatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgcg
gcatcgcgtgcggcagtggcatcgtcggtcgaagccaagtcgaacggtacggtccgcttc
accgcgaccatgcgttacgtcaccaacggcaagggcgcccagatcgtcatttcgcgttcc
ggcgaagtgctgatcacggacgaccacggccgcgagcgcgagcgtcacaaggtgccgtac
ggcgcgaccctggcggtgcatgacggcatggtggtgaaagccggcctgccgctagcaacc
tgggatccgctgacccgtccgatcatcacggaatacggcggcacgatcaagttcgaaaac
gtggaagagggcgtcaccgtcgctcgccaggtggacgaagtgaccggcctgtcgaccctg
gtggcgatcgatccgaagcgccgcggttcgggcaagaccctgcgtccgcaggtcaagctg
ctgaacgaagaaggccaggaagtgaagatcgccggcaccgagcacgccgtgacgatcggc
ttccaggtcggcgcgctgatcatggtcaaggacggccagcaggcgtcggtgggtgaagtg
cttgcacgtatcccgaccgagtcgcagaagacccgtgacattaccggtggtctgccgcgc
gttgccgagctgttcgaagcccgttcgccgaaagatgccggcatgctggcggaagtcacc
ggtacggtcgccttcggtaaagagaccaagggcaagcagcgcctggaaatcaccgacatg
gacggcaacaagcacgagttcctgattaccaaggacaagcaagtgctggtgcacgacggc
caggtggtgaacaagggcgagatgatcgtggacggcccggccgatccgcaagacatcctg
cgcctgctgggtatcgaagcgttggcccgctacatcgtcgacgaagtgcaggacgtgtac
cgtctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctg
cgccgtgtccagatcgtcgaagccggcgacaccgactacatcgtcggcgagcaggtcgag
cgttcggaactgctggaagcgaacgaccgtatcgaagccgcgggcaagctgccggcgacc
tacgagaacgtcctgctgggtattaccaaggcatcgctgtcgaccgactcgttcatctcg
gccgcatcgttccaggaaaccacccgcgtgctgaccgaagcggcgatcatgggcaagcgc
gacggtctgcgcggcctgaaggaaaacgtcatcgtcggccgcctgatccctggcggtacc
ggcctggccttccaccgcgcccgcaaggaaaaagaagcgtgggaagcggaagagcgccag
cagctgctgcagcaggagaaggccaacatggctgccgaactgcaggcgatggaagaccag
cagcaggctgcggcttcgatcgagcagcatcatggcgatggcgagtga

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