Massilia sp. WG5: AM586_04785
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Entry
AM586_04785 CDS
T04122
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
masw
Massilia sp. WG5
Pathway
masw03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
masw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AM586_04785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
masw03400
]
AM586_04785
Enzymes [BR:
masw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
AM586_04785
DNA repair and recombination proteins [BR:
masw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
AM586_04785
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
ALK95691
LinkDB
All DBs
Position
complement(4247702..4248472)
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AA seq
256 aa
AA seq
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MPRIISANLNGIRSAHKKGFFNWLATQNADFICVQELKAQQADMTEEFLAPHGYHGHFHY
AEKKGYSGTGVYSRSKPDAVRTGFGCVEFDNEGRYTRCDVGALTVISVYCPSGSSSPERQ
EAKFRFMDVFLPHLQELKAEGREVVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMT
RLFDELGLVDVHRAVAPEAADYTWWSNRGQAYAKNVGWRIDYHVATPGIAARAHAVSIYK
DERFSDHAPLIIDYAL
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgccaagaattatctccgcgaacctgaacggtatccgctccgcccacaaaaaaggcttc
ttcaactggctggcgacccagaacgccgacttcatctgcgtgcaggagctgaaagcccag
caggccgacatgaccgaggagttcctcgcgccgcacggctaccacggccattttcactac
gccgaaaagaagggctactccggcaccggcgtgtacagccgcagcaagccggacgcggtc
cggaccggcttcggctgcgtcgagttcgacaatgaaggccgctacacccgctgcgacgtc
ggcgccctgaccgtgatctcggtctactgcccttccggctcgtcctcgccggagcgccag
gaagccaagttccgcttcatggacgtgttcctgccgcacctgcaggaactgaaggccgag
ggacgtgaagtcgtcatctgcggcgactggaacatcgcgcacaaggaaatcgacctcaag
aactggaaaagcaaccagaagaactccggcttcctgccggaggagcgcgcgtggatgacc
cgtctgttcgacgaactgggcctggtggacgtgcaccgcgcggtggcgccggaagccgcc
gattacacctggtggagcaaccgcggccaggcctatgcgaagaacgtgggctggcgcatc
gactaccacgtcgccaccccgggcatcgccgccagggcgcatgccgtctcgatctacaag
gacgagcgcttctcggaccacgcgcccctgatcatcgactacgcactgtaa
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