Massilia sp. WG5: AM586_17980
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Entry
AM586_17980 CDS
T04122
Name
(GenBank) exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
masw
Massilia sp. WG5
Pathway
masw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
masw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AM586_17980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
masw03400
]
AM586_17980
Enzymes [BR:
masw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AM586_17980
DNA repair and recombination proteins [BR:
masw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AM586_17980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
ALK97812
LinkDB
All DBs
Position
complement(1214654..1218340)
Genome browser
AA seq
1228 aa
AA seq
DB search
MSQLLEPLGFPLHGSRLIEASAGTGKTWTIAALYLRLVLGHGNAQGQEAGFPRPLMPPEI
LVMTFTRAATRELSNRVRERLVQAAGYFRGELGGDDFVDDPYLEALAESYEDEAARLVAA
HRLVLAAETMDEAAIFTIDAWCQRMLREHAFDSGSLFDEELVSDERALFEDAANDYWRQH
VYPLNGHALTSLLAVWPDVEALKGAARELVRRAELLGPDCVDENGNPNDMAPLGAVIAGV
ERAQQARLAHLKEGWRARADAMEAWIGGHRAANPKCFNGTKMKPDSLAKWFEALRAWALD
PALVQPDLGDTAWRRLTPDGIIDAFAKGFSTALPECFEHTEALKEALDEIEPMAHALLRH
AACNIARRMIDLKRRNRQFGFADMLARLKAALEGANGEALRKRILDQFPVAMVDEFQDTS
PDQYRIFDLLYRVADNDPTHGLFLIGDPKQSIYGFRGADIHSYLSARRATAGRHYQLGTN
YRSTKQLVAAVNRLFEYAEGGKAHPGYAAGAFRFRKEGENPLPFEPVGAAGRAQELVGVD
GPFQALAVATTDREDLRADDYRDFFAHHCAEHIVTLLNDPKVGFADRDGGFKRLMPADIA
VLVRDRREAAAIRRALAQRKVASVYLSDQDSVVESQEAVDVLRWLQAVASPLDGMLARTA
FATATCALPLPELARLSSDELAWEERVEQLKGLHQTWQRQGVLAMLRRFIHELGLPAKLL
AVSGGERRLTNLLHLAELLQEASRELDGEQALIRWFAEQIEGLGEGGDERVLRLESDAEL
VKVVTVHKSKGLEYPLVYLPFAVTARKTDRRNRAFFEYVHEDGGRRIDLALSEDALKAVD
RARLEEDLRLLYVALTRARHFLWLGVAAVAAGRKGENRLHESALGYLLTGGEPVQAAAMR
ERWEGLRGGLNAIELHTLEAPEGCTQLVRADVRPELLEAPAFTGQFERNWAVGSFTSLTR
NTVAPPTRPQEENLMEEDEPGTVEVQRADDAPWHRFPRGATPGNFLHEQLEWMAQEGFGR
MDEDELYARRVQRIQRAGWGNRVDDAMEWLDALVSLPLPPVGCALAELEEVVPEMEFWFP
SRALDVGALDRLCRQRLLGDVERPTVPERQLHGMLKGFTDLVFECHGRYWVLDYKSNALG
PNDAAYTERAMAAAMAGHRYDIQGAIYLLALHRLLRARLGEAYDPREQLGGAVFLFLRGI
GNEATRGCYLIEPDMVLLDGLDRLLAND
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgagccagttgctcgaacccctgggcttcccgctgcacggctcgcgcctgatcgaggcc
agcgccggtaccggcaagacctggaccatcgccgcgctgtacctgcgcctggtgctcggg
cacggcaatgcgcaagggcaggaagccggtttcccgcgcccgctgatgccgcccgagatc
ctggtgatgaccttcacccgcgccgccacccgcgagctgtcgaaccgcgtgcgcgagcgc
ctggtgcaggcggccggctacttccgcggcgaactcggtggcgacgactttgtcgacgat
ccctacctcgaagcgctggccgaaagctacgaggacgaggccgcgcgcctggtcgccgcg
caccgcctggtgctggccgccgagaccatggacgaggcggcgatcttcaccatcgacgcc
tggtgccagcgcatgctgcgcgagcacgccttcgacagcggcagcctgttcgacgaagag
ctggtcagcgacgagcgcgccctgttcgaggacgccgccaacgactactggcgccagcac
gtgtatccgctgaacggacacgccttgacatccctgctggccgtctggcccgacgtcgag
gccctgaagggcgccgcgcgcgaactggtcaggcgcgccgagctgctgggtccggactgc
gtcgacgagaacggcaatccgaacgacatggcgcccctcggcgccgtcatcgccggcgtc
gagcgcgcccagcaggccaggctggcgcacctgaaggaaggctggcgggcgcgcgccgat
gcgatggaagcctggatcggcggacaccgcgcagcgaatccgaagtgcttcaacggcacc
aagatgaagccggactcgctggcgaagtggttcgaggccctgcgcgcctgggccctggat
ccggcgctcgtgcagccggacctcggcgataccgcctggcgccgcctgacgccggacggc
atcatcgatgccttcgccaagggcttcagcacggcgctgccggaatgcttcgagcatacc
gaagcgctgaaggaagcgttggacgagatcgagccgatggcgcatgcgctgctgcgccat
gccgcctgcaatatcgcgcgccgcatgatcgacctgaagcgccgcaaccgccagttcggc
ttcgccgacatgctggcgcgcctgaaggccgcgctggaaggcgcgaacggcgaagcgctg
cgcaagcgtatcctcgaccagttcccggtggcgatggtcgacgaattccaggacacctcg
ccggaccagtaccgcatcttcgacctgctgtaccgcgtggccgataacgatccgacgcac
ggcctgttcctgatcggcgacccgaagcagtcgatctacggcttccgcggcgccgatatc
cacagctacctgtccgcgcgccgcgccaccgccgggcgccactaccagctcggcaccaac
taccgctcgaccaagcagctggtggcggccgtcaaccggctgttcgaatatgccgaaggc
ggcaaggcgcatcccggctatgcggccggcgccttccgcttccgcaaggagggcgagaat
ccgctgcccttcgagccggtcggggcggcgggacgcgcccaggagctggtcggcgtggac
gggcccttccaggcgctggcggtggccacgaccgatcgcgaagacctgcgcgccgacgac
taccgcgacttcttcgcccaccactgcgccgagcacatcgtcacactgctgaatgatccg
aaggtgggcttcgcggaccgcgacggcggcttcaagcgcctgatgccggccgatattgcg
gtgctggtgcgcgaccgccgcgaagccgcggcgatccggcgcgcgctggcgcagaggaag
gtggccagcgtctacctgtccgaccaggattcggtggtcgaaagccaggaagcggtggac
gtgctgcgctggctgcaggcggtggccagcccgctcgacggcatgctggcgcgcaccgcc
ttcgccaccgccacctgcgcgctgccgcttcccgagctggcccgcctgtcgagcgacgaa
ctggcctgggaagagcgggtcgagcagctgaaaggcctgcaccagacctggcagcgccag
ggcgtgctggcgatgctgcgccgcttcatccacgaactcgggctgccggccaagctgctg
gctgtctccggcggcgagcggcgcctgacgaacctgctgcacctggccgaactgctgcag
gaagccagccgcgagctggatggcgaacaggccctgatccgctggttcgccgaacagatc
gagggactgggcgagggcggcgatgaacgggtgctgcgcctggaaagcgacgccgagctg
gtcaaggtggtcacggtccacaagtcgaagggcctggaatacccgctggtctacctgccc
ttcgccgtcaccgcgcgcaagaccgaccgccgcaaccgcgccttcttcgaatacgtgcat
gaggacggcgggcgccgcatcgacctggccctgagcgaggacgcgctgaaagccgtcgac
cgtgcgcgcctcgaagaagacctgcgcctgctgtacgtggccctgacccgcgcgcgccac
ttcctgtggctgggcgtggcggccgtggcggccggccgcaagggcgagaaccggctgcac
gaatcggcgctcggctacctgctgaccggcggcgaaccggtccaggccgcggccatgcgc
gagcgctgggaaggcctgcgcggcggcctcaatgcgatcgagctgcacacgctcgaggcg
cccgaaggctgcacgcagctggtgcgcgccgacgtgcgtcccgaactgctcgaggccccg
gccttcaccggccagttcgaacgcaactgggcggtcggctccttcacctcgctgacccgg
aacaccgtcgcgccgccgacccggccgcaggaagaaaacctgatggaagaggacgaaccg
ggcacggtcgaagtgcagcgcgcggacgacgcgccgtggcaccgctttccgcgcggcgcc
acgcccggcaacttcctgcacgagcaactggagtggatggcgcaggaaggcttcggccgc
atggacgaggacgagctgtatgcgcgccgggtccagcgcatccagcgcgccggctggggc
aaccgggtggacgacgcaatggaatggctcgatgcgctggtgagcctgccgctgccgccg
gtcggctgcgcgctggccgagctcgaggaagtggtgccggagatggaattctggttcccc
agccgcgccctggacgtgggcgcgctggaccgcctgtgccgccagcgcctgctgggcgac
gtggagcgcccgaccgtgccggagcgccagctgcacggcatgctgaagggtttcacggac
ctggtgttcgagtgccatggccgctactgggtgctggactacaaatcgaacgccctgggc
ccgaacgacgccgcgtacaccgagcgggcgatggcggcggcgatggccgggcaccgctac
gacatccagggcgcgatctacctgctcgccctgcaccggctgctgcgcgcgcgcctgggc
gaagcctacgacccgcgcgaacagctgggcggcgcggtgttcctgttcctgcgcgggatc
ggcaacgaggccacccgcggctgctacctgatcgagccggacatggtcctgctcgatgga
ctcgataggctgcttgcaaatgactga
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