Massilia sp. WG5: AM586_20375
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Entry
AM586_20375 CDS
T04122
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
masw
Massilia sp. WG5
Pathway
masw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
masw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AM586_20375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
masw03400
]
AM586_20375
DNA repair and recombination proteins [BR:
masw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AM586_20375
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AM586_20375
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
Kinesin
FlaG
Motif
Other DBs
NCBI-ProteinID:
ALK98186
LinkDB
All DBs
Position
1729244..1731328
Genome browser
AA seq
694 aa
AA seq
DB search
MAELSVANTPAPTVITFPNSPFKLHQPFPPAGDQPTAIDGLVEGIDDGLMYQTLLGVTGS
GKTYTMANVIARAGRPAIVFAPNKTLAAQLYAEFREFFPQNAVEYFVSYYDYYQPEAYVP
QRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVIIVATVSAIYGIGNPDEYHKMVLTLRA
KDKVAQRDVIARLIQMQYTRNEMDFARGTFRVRGDTIDIFPAEHAELAIRVEMFDDEIES
LQLFDPLTGKVRQKIPRFTVYPGSHYVTGRSTVLKAVDSIKAELRDRLEYFREAGKLLEE
QRLEQRTRFDLEMLAEVGFTKGIENYSRHLSGAMPGEPPPTLIDYLPKDALMFMDESHVM
VGQLNAMYNGDRSRKTNLVDYGFRLPSALDNRPLKFQEFENKMRQCIFVSATPADYEKQK
ADNVVEQVVRPTGLVDPQVIVRPARSQVDDLMGEINDRIAKDERVLVTTLTKRMAEQLTE
YLSDHGIKVRYLHSDIDTVERVEILRDLRLGTFDVVVGINLLREGLDLPEVSLVAVLDAD
KEGFLRSERSLIQTIGRAARNLNGVAILYADQITDSMKKAIDETERRRAKQIAFNEANGI
TPKGVNKKIKDMIDGVYSAAAAKNMEQAEETAKIEGMSEKQISKEIKRLEKLMVDHAKNL
EFEKAAQVRDQLHVLKQQAFGAPGADNVVSMLGK
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcagaactatcggtcgcaaatactcccgcgcccaccgtcatcactttcccgaattct
ccgttcaagctgcaccagcccttcccgcccgccggcgaccagccgaccgcgatcgatggc
ctggtcgaaggcatcgacgacggcctgatgtaccagacgctgctgggcgtcaccggttcc
ggcaagacctacacgatggccaacgtgatcgcccgtgcgggccgtccggcgatcgtgttc
gcgccgaacaagaccctggccgcccagctgtacgccgagttccgcgagttcttcccgcag
aacgcggtcgagtatttcgtctcctactacgattactaccagccggaagcctatgtgccg
cagcgcgacctgttcatcgagaaggactcgtcgatcaacgagcacatcgagcagatgcgc
ctgtcgtgcacgaagtcgctgatggaacggcgcgacgtcatcatcgtcgcgaccgtgtcg
gccatctacggtatcggtaatccggacgagtaccacaagatggtgctgacgctgcgcgcc
aaggacaaggtggcgcagcgcgacgtgatcgcacgcctgatccagatgcagtacacgcgc
aacgagatggacttcgcgcgcggcaccttccgcgtgcgcggcgacaccatcgacatcttc
ccggccgagcacgccgagctggcgatccgcgtcgagatgttcgacgacgagatcgaatcg
ctgcagctgtttgatcccttgaccggcaaggtgcgccagaagattccgcgcttcaccgtc
tacccgggttcgcactacgtgaccgggcgcagcaccgtgctgaaggccgtcgactcgatc
aaggccgagctgcgcgaccgcctcgaatacttccgcgaagcgggcaagctgctggaagag
cagcgcctcgaacagcgcacccgcttcgacctcgagatgctggccgaagtcggcttcacg
aaaggcatcgagaactactcgcgccacctgtccggcgcgatgccgggcgagccgccgccg
acgctgatcgactacctgccgaaggacgcgctgatgttcatggacgagtcgcacgtgatg
gtcggccagctcaacgcgatgtacaacggcgaccgttcgcgcaagacgaacctggtcgac
tacggcttccgcctgccgtcggcgctggacaaccggccgctgaagttccaggaattcgag
aacaagatgcgccagtgcattttcgtctcggcgacgccagccgactacgaaaagcagaag
gccgacaacgtggtcgagcaggtggtgcgtccgaccggcctggtcgacccgcaggtcatc
gtgcgccccgcgcgctcgcaggtcgacgacctgatgggcgagatcaacgaccgcatcgcc
aaggacgagcgcgtgctggtgaccacgctgaccaagcgcatggccgagcagctcaccgaa
tacctgagcgaccacggcatcaaggtgcgctacctgcacagcgacatcgataccgtcgag
cgcgtcgagatcctgcgcgacctgcgcctgggcaccttcgacgtggtggtcggcatcaac
ctgctgcgcgagggcctggacctgccggaagtctcgctggtggccgtgctggacgccgac
aaggaaggcttcctgcgttcggaacgctcgctgatccagaccatcggccgcgcggcgcgt
aacctgaacggcgtggcgatcctgtacgccgaccagatcaccgactcgatgaagaaagcc
atcgacgagaccgagcgccgccgcgccaagcagatcgccttcaacgaagccaacggcatc
accccgaaaggcgtgaacaagaagatcaaggacatgatcgacggcgtctacagcgccgcc
gcggccaagaacatggaacaggccgaggaaaccgcgaagatcgagggcatgagcgagaag
cagatttcgaaagagatcaagcgcctcgagaagctcatggtcgaccatgccaagaacctc
gagttcgagaaggcggcccaggtgcgcgaccagctgcatgtgctcaagcagcaggctttc
ggggcgccgggggcggacaatgtggtgtcgatgctgggcaagtaa
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