Massilia sp. WG5: AM586_23345
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Entry
AM586_23345 CDS
T04122
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
masw
Massilia sp. WG5
Pathway
masw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
masw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AM586_23345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
masw03019
]
AM586_23345
03009 Ribosome biogenesis [BR:
masw03009
]
AM586_23345
Enzymes [BR:
masw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AM586_23345
Messenger RNA biogenesis [BR:
masw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AM586_23345
Ribosome biogenesis [BR:
masw03009
]
Prokaryotic type
rRNA helicases
AM586_23345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
adh_short
Motif
Other DBs
NCBI-ProteinID:
ALK98696
LinkDB
All DBs
Position
complement(2393834..2395657)
Genome browser
AA seq
607 aa
AA seq
DB search
MHDTQLPTFADLNLPAPILKALKDVGYETPSPIQAATIPLLMEGRDILGQAQTGTGKTAA
FALPVLSRIDVKNPAVQALVLAPTRELAIQVAEAFQSYAAHLKNFHVLPIYGGQAYGPQL
SALRRGAQVVVGTPGRVIDHLDKGTLDLSQLTTLVLDEADEMLRMGFIDDVERILQETPE
QRQTALFSATMPPAISRIAKTYLREPKEVTVAAKTTTATNITQRYWLVAGLQKLEALTRI
LEAEPFDGMIIFARTKLGTEELASKLQARGFAAAAINGDLAQQQRERTIDQLKNGKIDIL
VATDVAARGLDVERISHVINYDVPSDPESYTHRIGRTGRAGRSGDAILFVTPRERGMLKA
IERATRQPVAQLTLPTIKAVNDVRIAKFKDQIGEALAAGGLDLFRNLIEEYEREHNVPAI
DIAAALAKLNRGDEPLLIEKPDREPKPEWKEREPRPEWRDDARPARAGRESFGSDERPAR
PTREGFAQPRESFKKERVMRAPEPGMATYRIEVGHANSVKPGNIVGAIANEGGIPSKEIG
RIEIYDDYSTLDMPADLPQDLLQHLQKVWVAGRQLNITRDGEEPIKAAPKKKFGEKKFGE
KKTFKKS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacacccagctcccgacgtttgccgacctgaaccttcccgcaccgatcctgaaa
gcgctgaaggacgtcggctacgagacgccgtcgccgatccaggccgccaccatccccctc
ctgatggaaggccgcgacatcctcgggcaggcccagaccggcaccggcaagaccgcggcg
ttcgcgctgccggtcctgtcgcgcatcgacgtcaagaaccccgccgtgcaggcgctggtg
ctggcgccgacgcgcgagctggcgatccaggtggccgaagccttccagagctacgctgcg
cacctgaagaatttccacgtgctgccgatctacggcggccaggcctacggtccgcagctg
tcggcgctgcgccgcggcgcgcaggtcgtggtcggcacccccggccgcgtcatcgaccac
ctcgacaagggtacgctcgacctgtcccagctgaccaccctggtgctggacgaggccgac
gagatgctgcgcatgggcttcatcgacgacgtcgagcgcatcctgcaggagaccccggag
cagcgccagaccgcgctgttctcggccaccatgccgccggcgatcagccgcatcgccaag
acctacctgcgcgaaccgaaggaagtgacggtggccgccaagaccaccaccgccaccaac
atcacccagcgctactggctggtggccggcctgcagaagctggaagccctgacccgcatc
ctggaagccgagcccttcgacggcatgatcatcttcgcgcgcaccaagctgggcaccgag
gaactggcgtccaagctgcaggcgcgcggcttcgcggccgccgccatcaacggcgacctg
gcccagcagcagcgcgagcgcaccatcgaccagctcaagaacggcaagatcgacatcctg
gtcgccaccgacgtcgccgcgcgcggcctggacgtcgagcgcatcagccacgtgatcaac
tacgacgtgccgtcggatccggaaagctatacccaccgcatcggccgcaccggccgcgcc
ggccgcagcggcgacgcgatcctgttcgtgaccccgcgcgagcgcggcatgctgaaggcg
atcgagcgcgccacccgccagccggtcgcccagctgaccctgccgaccatcaaggccgtc
aacgacgtgcgcatcgcgaagttcaaggaccagatcggcgaagccctggcggccggcggc
ctggacctgttccgcaacctgatcgaagagtacgagcgcgaacacaacgtgccggcgatc
gatatcgccgcggcgctggcgaagctgaaccgcggcgacgagccgctgctgatcgaaaag
ccggaccgcgagccgaagccggagtggaaggagcgggagccgcgccctgaatggcgcgac
gatgcgcgtccggcccgcgccggccgcgaaagcttcggcagcgacgagcggcctgcacgt
ccgacgcgcgaaggcttcgcccagccgcgcgagagcttcaagaaggagcgcgtgatgcgc
gcgccggaaccgggcatggcgacctaccgcatcgaagtcggccacgccaacagcgtcaag
ccgggcaacatcgtcggcgcgatcgccaacgagggcggcatcccgtccaaggaaatcggc
cgcatcgagatctacgacgactactcgaccctcgacatgccggccgacctgccgcaggac
ctgctgcagcacctgcagaaggtctgggtggccggccgccagctgaacatcacgcgcgac
ggcgaggagccgatcaaggccgcgccgaagaagaagttcggcgagaaaaagttcggcgag
aagaagaccttcaaaaagtcctga
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