Massilia sp. WG5: AM586_23725
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Entry
AM586_23725 CDS
T04122
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
masw
Massilia sp. WG5
Pathway
masw03030
DNA replication
masw03430
Mismatch repair
masw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
masw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AM586_23725 (dnaE)
03430 Mismatch repair
AM586_23725 (dnaE)
03440 Homologous recombination
AM586_23725 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
masw03032
]
AM586_23725 (dnaE)
03400 DNA repair and recombination proteins [BR:
masw03400
]
AM586_23725 (dnaE)
Enzymes [BR:
masw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AM586_23725 (dnaE)
DNA replication proteins [BR:
masw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AM586_23725 (dnaE)
DNA repair and recombination proteins [BR:
masw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AM586_23725 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RMI2
HROB
Motif
Other DBs
NCBI-ProteinID:
ALK98764
LinkDB
All DBs
Position
complement(2493299..2496793)
Genome browser
AA seq
1164 aa
AA seq
DB search
MTSPTFTHLRVHSEYSIVDGLVRIDDLVAATVKDQQPAVAVTDLANAFALVRFYKAARGK
GVKPIVGVDAWITNDENRDKPFRLLILCKNKTGYLQLCELLSKAWLTNQYKGRAEIRVEW
LEALATSVSTLEPDVPQSNALIVLSGAQFGDIGQAIDNGDIAKAEACAARWAGIFPGHFY
IEIQRAGQPNQEQQVRHSVALAGRLGLPVVATHPVQFISKDEFIAHEARVCIAEGEMLAN
AKRVRRFNENMCFKSQDEMAELFRDLPGALANSVEIAKRCNVTLTLGKPQLPNFPTPGMT
IDEFLVAETKKGLEERLIQLFPDPAQREKERPRYEARLEFENNTIIKMKFPGYFLIVAEF
IQWGKNNGVPIGPGRGSGAGSLVAYALKITDLDPLKYNLLFERFLNPERVSMPDFDIDFC
QEKRELVIQHVKDLYGRDAVSQIATFGTMAAKGAIRDVGRVLDFGYNFCDGISKLIPFKP
GKPVSIAEAIEEEPMLKERLENEEEVKQLLDLAQQVEGITRNIGMHAGGVLIAPGKLTDF
CPLYTQGGDAGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDRAVNYIRALDPQDAGFNLE
SLPLTDRPSYKLLTEAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIP
DFCKRKHGEKFDYPDPRTESILSETYGIMVYQEQVMQMAQIVGGYSLGGADMLRRAMGKK
KAEEMAEHRAIFRAGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLSYHTAYLK
VHHTAAFMAANMSLAMEDTDKIKILVEDSIDVCKLTILPPDVNESQFRFTPEGPPRSVTG
KQVSNIRYGLGGVKGAGQGAIEAIIAAREEGGKFKDLFDFCLRVDRKQINRRTIESLIRA
GAMDCFGVDRAILLASVGFAMEAAGQAAAAANQVSLFGGDDSDLVAPPEYVKATPWTDRQ
KLAEEKTALGYYLSGHMFDSYQQEVRRFAKTKLKDLEPSRDPRMLCGVITGVRTQLTQRG
KILIVTLDDKTGVVEVTIYNELLEANKNIFREDEFLLVVGKVSEDRFNGGLRITAEKAFD
IASARIQYGHKLEMDVECTVSPAKLAEILQPYRQEGGLPVSLRVAPQGISCVVQLGDGWR
VAPSDELKYALELQLGAKEVAVEY
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgacttccccgacctttacccacctgcgcgtacactccgaatactcgatcgtcgacggc
ctggtccgcatcgacgacctggtggcggctaccgtcaaggaccagcagccggccgtggcc
gtgaccgacctggccaacgcgtttgccctggtccgcttctacaaggctgcgcgcggcaag
ggcgtcaagcccatcgtcggggtcgacgcctggatcaccaacgacgagaaccgcgacaag
ccgttccgcttgttgattctttgcaagaacaagaccggctacctgcagctgtgcgaactg
ctgtccaaggcctggctcaccaaccagtacaagggcagggccgagatccgcgtcgagtgg
ctggaagcgctggcgaccagcgtctccacgctggagccggacgtgccgcagtcgaacgcc
ctgatcgtcctgtcgggcgcccagttcggcgacatcggccaggccatcgacaacggcgat
atcgccaaggccgaggcctgcgccgcccgctgggccggcatcttccccggccatttctac
atcgagatccagcgcgccggccagcccaaccaggagcagcaggtgcgccattcggtggcg
ctggccggccgcctcgggctgccggtggtggcgacccatccggtgcagttcatcagcaag
gacgaattcatcgcccacgaagcgcgcgtctgtatcgccgagggcgagatgctggccaac
gccaagcgcgtgcgccgcttcaacgagaacatgtgcttcaagtcccaggacgagatggcc
gagctgttcagggacctgccgggcgcgctcgccaactccgtcgaaatcgccaagcgctgc
aacgtgaccctcacgctgggcaagccgcagctgccgaacttcccgaccccgggcatgacc
atcgacgaattcctggtcgccgaaacgaagaagggcctggaagagcgcctgatccagctg
ttccccgatccggcgcagcgcgagaaggagcgtccgcgctacgaggcgcgcctggagttc
gagaacaacaccatcatcaagatgaagttcccgggctacttcctgatcgtggcggagttc
atccagtggggcaagaacaacggcgtgccgatcggcccgggccgcggctcgggcgcgggc
tcgctggtcgcctacgccctcaagatcaccgacctcgatccgctgaaatacaacctgctg
ttcgagcgcttcctgaacccggaacgcgtctcgatgcccgacttcgacatcgacttctgc
caggaaaagcgcgaactggtgatccagcacgtgaaggacctgtacggccgcgacgcggtg
tcgcagatcgccaccttcggcaccatggcggcgaaaggcgcgatccgcgacgtcggccgc
gtgctcgatttcggctacaacttctgcgacggcatctcgaagctcatccccttcaagcct
ggcaagccggtctcgattgcggaagcgatcgaagaggagccgatgctcaaggagcggctc
gagaacgaggaagaggtcaagcagctgctcgacctcgcccagcaggtcgagggcatcacc
cgtaacatcggcatgcacgccggcggcgtgctgatcgcccccggcaagctgaccgacttc
tgcccgctgtacacccagggcggcgacgccggcgtggtctcgcagtacgacaaggacgac
gtggaggcggccggcctggtgaagttcgacttcctgggcctgaccacgctgaccatcctc
gaccgcgccgtcaactacatccgcgcgctcgatccgcaggatgccgggttcaacctggag
tcgctgccgctgaccgaccggccctcgtacaagctgctgaccgaggcgaagaccgtcgcc
gtgttccagcttgaatcgcgcggcatgcagggcatgctgaaggatgcgcgtcccgaccgc
ttcgaggacatcatcgcgctggtggcgctgtaccgtccgggcccgatggacctgatcccc
gatttctgcaagcgaaagcacggcgagaagttcgactaccccgacccgcgcaccgagtcg
atcctgtccgagacctacggcatcatggtctaccaggagcaggtcatgcagatggcgcag
atcgtcggcggctactcgctgggcggcgcggacatgctgcgccgtgcgatgggcaagaag
aaggccgaggaaatggcggagcaccgcgcgatcttccgcgccggcgccgccaaggacggc
ctgtcgaccgaaaaggccgacgagatcttcgacctgatggaaaagttcgcgggctacggc
ttcaacaagtcgcacgccgccgcatacgcgctgctgtcgtaccacacggcctacctgaag
gtccaccacaccgccgcgttcatggcagctaacatgtcgctggccatggaagacacggac
aagatcaagatcctggtcgaggactcgatcgacgtctgcaagctgaccatcctgccgccg
gacgtcaacgaatcgcagttccgcttcaccccggaaggcccgccgcgttccgtcaccggc
aagcaggtgtcgaacatccgctatggcctgggcggcgtgaagggcgccggccagggcgcg
atcgaagccatcatcgcggcgcgcgaggagggcggcaagttcaaggacctgttcgacttc
tgcctgcgcgtcgaccgcaagcagatcaaccgccgcaccatcgagtcgctgatccgcgcc
ggcgccatggactgcttcggcgtcgaccgcgcgatcctgctggcctcggtcggcttcgcg
atggaagcggccggccaggcggcggcggcggccaaccaggtcagcctgttcggcggtgac
gactccgacctggtcgccccgcccgagtatgtgaaggccaccccctggaccgaccgccag
aagctggccgaggaaaagactgcgctcggctactacctgtcgggccatatgttcgattcc
taccagcaggaagtgcggcgcttcgccaagaccaagctgaaggacctcgagccttcgcgc
gacccgcgcatgctgtgcggcgtgatcaccggcgtgcgcacccagctgacccagcgcggc
aagatcctgatcgtcacgctcgacgacaagaccggcgtggtcgaagtcacgatctacaac
gagctgctcgaggccaacaagaacatcttccgcgaagacgaattcctgctggtggtcggc
aaggtgtcggaagaccgcttcaatggcggcctgcgcatcaccgccgagaaggccttcgac
atcgccagcgcgcgcatccagtacggccacaagctggaaatggatgtcgaatgcacggtg
agcccggccaagctggcggagatcctgcaaccctaccgccaggaaggcggcctgccggtc
agcctgcgcgtggcgccacagggcatttcctgcgtggtgcagctgggcgacggttggcgc
gtggcgccctcggacgaactgaaatacgcgctcgaactgcagctgggcgcgaaagaagta
gcggtcgagtactaa
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integrated database retrieval system
