Massilia sp. YMA4: DPH57_01445
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Entry
DPH57_01445 CDS
T05528
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
masy
Massilia sp. YMA4
Pathway
masy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
masy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DPH57_01445 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
masy03019
]
DPH57_01445 (pnp)
03016 Transfer RNA biogenesis [BR:
masy03016
]
DPH57_01445 (pnp)
Enzymes [BR:
masy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DPH57_01445 (pnp)
Messenger RNA biogenesis [BR:
masy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DPH57_01445 (pnp)
Transfer RNA biogenesis [BR:
masy03016
]
Prokaryotic type
tRNA degradation factors
DPH57_01445 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_RRP5
KH_KhpA-B
OB_RRP5_4th
DUF5813
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AXA89957
LinkDB
All DBs
Position
313853..315967
Genome browser
AA seq
704 aa
AA seq
DB search
MFNKVTKTFQYGQHTVTLETGEIARQASGAVMVSMDDTVVLATVVARKDAKPGQDFFPLT
VDYIEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYMNEVQVIIHVLSV
NPEIDPDIASMIGASAALCVAGVPFNGPIGAARVGYANGQYILNPTTTQLKTSEMDLVVA
GTETAVLMVESEAKQLSEEVMLGGVVYGHEQMRAVIDAIHALVEEGGKPEMEWTPPAKNE
ALIAKVAQFAEAKINQAYQIKNKQSRQQALRSMHDEVIADLAAQAAAEGVDAPDSVEVGN
ILFDMEAKVVRSQILNGEPRIDGRDTRTVRPIAIRTSVLPRTHGSALFTRGETQALVVAT
LGTARDSQKIDALMGEYTDDFMLHYNMPPFATGETGRVGTPKRREVGHGRLAKRALVAAL
PSPEEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGGKF
AVLSDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALAQAKEGRQHILG
EMQKAMPHVKTELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV
TIASVDAAAGQEAKRRIEELTASVEVGKTYDGTVLKLLDFGAIVQVMPGKDGLLHISQIA
NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAADEAAPAA
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacaaagttacgaaaaccttccagtacggccaacacaccgtgaccctggaaacc
ggcgagatcgctcgccaggcatccggcgcggtgatggtgtcgatggacgacaccgtcgta
ctggcaaccgtcgtggcacgcaaggacgccaagccgggtcaggatttcttcccgctgacc
gtcgactacatcgagaagacctatgccgcgggcaagatccccggtggcttcttcaagcgc
gaaggccgtccgtccgagaaggaaacgctgacgtcgcgcctgatcgaccgtccgatccgc
ccgctgttcccggaaggttacatgaacgaggtgcaggtcatcatccacgttctgtcggta
aatcctgagatcgaccctgacatcgcttcgatgatcggtgcctccgccgccctgtgcgtg
gccggcgtgccgttcaacggcccgatcggcgccgcccgcgtgggttacgccaacggccag
tacatcctgaacccgaccacgacccagctgaagacgtccgagatggacctggtcgttgcc
ggtaccgaaacggccgtgctgatggtcgaatcggaagccaagcagctgtccgaggaagtc
atgctgggcggcgtggtctacggccacgagcagatgcgcgccgtcatcgacgcgatccac
gccctggtggaagaaggcggcaagccggaaatggaatggaccccgccggccaagaacgaa
gcgctgatcgccaaggtcgcccagttcgccgaagcgaagatcaaccaggcttaccagatc
aagaacaagcagtcgcgccagcaggcgctgcgctcgatgcacgacgaagtgatcgccgac
ctggccgcgcaagccgctgccgaaggcgtcgacgcaccggattcggtcgaagtgggcaac
atcctgttcgacatggaagccaaggtcgtgcgttcgcagatcctgaacggcgagccgcgc
atcgacggccgcgacacccgcaccgtgcgtccgatcgcgatccgcacgtcggtgctgccg
cgtacccacggttccgcgctgttcacccgcggtgaaacgcaggcgctggtcgtggcgacc
ctgggcaccgcgcgcgattcgcagaagatcgacgcgctgatgggcgagtacaccgacgac
ttcatgctgcactacaacatgccaccgttcgccaccggcgaaacgggccgcgtgggcacg
ccgaagcgccgcgaagtgggccacggccgcctggccaagcgcgcgctggtcgccgcgctg
ccgtcgccggaagagttcagctactccgtgcgcctggtatccgagatcaccgagtcgaac
ggttcctcgtcgatggcatccgtctgcggcggctgcctggcgctgatggacgcgggcgtg
ccgatgaaggcgcacgtcgccggcatcgcgatgggcctgatcaaggaaggcggcaagttc
gccgtgctgtccgacatcctgggtgacgaagaccacctgggcgacatggacttcaaggtc
gccggcaccgccaacggcatcacggcgctgcagatggacatcaagatccagggcatcacg
aaggaaatcatgcaggtcgcgctggcgcaggcaaaagaaggccgccagcacatcctgggc
gagatgcagaaggcgatgccgcacgtgaagacggaactgtccgacttcgcaccgcgcctg
atcaccatcaagatcaacccggaaaagatccgtgacgtgatcggcaagggcggcgccgta
atccgcgcgctgaccgaggaaaccggcacgcagatcgacatcagcgacgagggcgtggtc
accatcgcttccgtcgatgccgccgccggccaggaagccaagcgccgcatcgaagagctg
acggcatcggtcgaagtgggcaagacctacgacggcaccgtcctgaaactgctggacttc
ggcgccatcgtgcaggtcatgccaggcaaggacggcctgctgcacatctcgcagatcgcc
aacgagcgtgtcaacgccgtggccgactacctgaaagaaggccagcaagtgcgcgtcaag
gtcctggaaacggacgaccgtggccgcctgaagctgtcgatgaaggcagcggacgaagcc
gcgccggcagcgtaa
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