Massilia sp. YMA4: DPH57_03625
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Entry
DPH57_03625 CDS
T05528
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
masy
Massilia sp. YMA4
Pathway
masy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
masy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DPH57_03625 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
masy03400
]
DPH57_03625 (recB)
Enzymes [BR:
masy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DPH57_03625 (recB)
DNA repair and recombination proteins [BR:
masy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DPH57_03625 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
AXA94538
UniProt:
A0A7U5Y3V2
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All DBs
Position
812073..815726
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AA seq
1217 aa
AA seq
DB search
MTFPLHGSRLIEASAGTGKTWTIAALYVRLVLGHGGEHGYLRPLLPADILVMTFTRAATR
ELSNRVRERLVEAAAYFRGQADGGDPYLDALLDAYPDHGARQQAAHRLMLAAETMDEAAI
FTIDSWCQRMLREHAFDSGSLFDEELVSDEAALFEDAAHDYWRQQVYPLREPALGALLAC
WPDVGRLKASLRDLVKRADGSWHRDGDGQPVALGTLIGSALHELQERLGALKAGWLERIE
RMEIWLEEKKDAGLLNGRKIQMKWLAGWFGSLRGWVADPARVDPEMAAAGWHRLSPEGIA
EAYEGSDVPAEFAELRQLKDDLAGIEPLAHRLYRHAAAVIAARMEELKRRNRQFGFADML
LRLQHALEGGNGAALRERITQQYPVALVDEFQDTAPSQYRIFDLLYRVADNEPNLGLFLI
GDPKQSIYGFRGADIHSYLAARRATAGRHYQLGTNYRSTREVVEAVNRIFLHAERLAGDK
GFDKGAFRFRSGAVNPLPFDPVDAKGRPERLVGVDGQLQALTVACADAPDLRADAYRDFF
AHHCAEHIVELLNHPGTGFEGPDGLRRLQPADIAILVRDRKEAKAIRDALRRRRVPSVYL
SDKDSVLDSDEARDVLRWLTALANPLDGNLARAAFATRTANLPLAELARFSADELAWEAR
TEQLKVLHTVWQRQGVLAMLRRFIHELGLPAALLAQPGGERRLTNLLHLAELLQSASRQL
DGEQALIRWMAEQVEGEGDNSDEQVLRLESDAELVKVVTVHKSKGLEYPLVYLPFAVTAR
KVERRNRSFFEYTDGDGVRRIDMALSEDAHAAVEAARIEEELRLLYVALTRARHFLWLGV
AALPAKAKGANVLHESALGYLLTGGAPLPADALQERWQHLRGDCAAIGIASAGVPERVTL
LNRVEHKPPLLEAAPFDAQFERDWSVGSFTSLTRGVQVEVPVPVPRDALEATLLEGEDGD
PAASGAAVQEAPWHRFPRGSVPGNFLHEQLEWLAQEGFDSIHDAGFDARIGRRIERAGWG
HRLEDTIAWLRELVVTRLPPLGAALQDVGMLLPEMEFWFPSERLATGALDALCRRHLLDG
MARPPLPQRALHGMLKGFSDLVFEHAGRYWVLDYKSNALGNRDSAYHAAALAHGMAEHRY
DVQGAIYLLALHRLLRSRLGEAYQPARHLGGAVFWFLRGVGNTTTRGCHLIGPDEALLDG
LDALLHAGAPDTTMDEQ
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
ctgacgttcccgctgcacggctcgcgcctgatcgaggccagcgccggcacgggcaagacg
tggaccatcgccgcgctgtacgtgcgcctggtgctgggccatggcggcgagcatggctac
ctgcggccactgctgccggccgacatcctggtgatgacgttcacccgcgccgccacgcgc
gagctgtccaaccgcgtgcgcgagcggctggtggaggccgccgcctacttccgcggccag
gccgacggcggcgatccctacctcgacgcgctgctcgatgcctaccccgaccacggcgcg
cgccagcaggccgcgcaccgcctgatgctggcggccgagacgatggacgaagcggccatc
ttcacgatcgactcgtggtgccagcgcatgctgcgcgagcacgccttcgacagcggcagc
ctgttcgacgaggaactggtcagtgacgaggcggccctgttcgaggacgcggcgcacgac
tactggcgccagcaggtctatccgctgcgcgaaccggcgctgggcgcgctgctggcatgc
tggccggacgtgggccgcctgaaggccagcctgcgcgacctggtgaagcgcgccgacggc
tcgtggcaccgcgacggcgacggccagccggtcgcactgggcaccctgatcggcagcgcg
ctgcacgagctgcaggagcgccttggcgcgctgaaggcgggctggctcgagcgcatcgag
cggatggagatctggctggaggaaaagaaggacgccggcctgctgaacgggcgcaagatc
cagatgaaatggctggccggctggttcggcagcctgcgcggatgggtggcggaccccgcc
cgcgtcgatccggagatggcggcggcgggctggcaccgcctgtcgccggagggcatcgcc
gaggcctacgagggcagtgacgtgccggccgaatttgccgaattgcgccagctcaaggac
gacctggccggcatcgagccgctggcgcaccgcttgtaccgccacgccgccgccgtgatc
gcggcacggatggaggaactgaagcggcgcaaccgccagttcggctttgccgacatgctg
ctgcggctgcagcacgcgctggaaggcgggaacggcgcggcgctgcgcgaacgcatcacc
cagcagtacccagtggcgctggtggacgagttccaggacacggcgcccagccagtaccgc
atcttcgacctgctgtaccgcgtggcggacaacgagccgaacctgggcctgttcctgatc
ggcgacccgaagcagtcgatctacggcttccgcggcgcggacatccacagctacctggcc
gcgcggcgcgccaccgccggccgccactaccagctgggcaccaactaccgctccacccgc
gaggtggtggaagcggtcaaccgcatcttcctgcacgccgagcggctggccggcgacaag
ggcttcgacaagggcgcgttccgcttccgctccggcgccgtcaatccgctgccgttcgat
ccggtcgacgcgaagggccggccggaacgcctggtcggcgtggacggacaattgcaggcg
ctgacggtggcctgcgcggacgcgccggacctgcgcgccgacgcctaccgcgacttcttc
gcgcaccactgcgccgagcacatcgtcgagctgctgaaccatcccggcacgggcttcgag
ggaccggacggcttgcgccgcctgcagccggccgacatcgccatcctggtgcgcgaccgc
aaggaagcgaaagcgatccgcgacgcgttgcggcggcggcgcgtgcccagcgtctacctg
tccgacaaggattcggtgctggacagcgacgaggcgcgcgacgtgctgcgctggctgacg
gcgttggccaacccactggacggcaacctggcgcgcgcggccttcgccacgcgcacggcc
aacctgccactggccgagctggcacgcttctcggccgacgagctggcgtgggaagcgcgc
accgaacagctcaaggtcctgcataccgtgtggcagcgccagggcgtgctggccatgctg
cgccgcttcatccacgaactggggctgccggccgccttgctggcgcagccgggcggggaa
cgccggctgaccaacctgttgcacctggccgaactgctgcagtcggccagccgccagctc
gatggcgagcaggccctgatccgctggatggccgagcaggtcgagggcgaaggcgacaac
agcgacgagcaggtgctgcggctggagtcggacgccgagctggtcaaggtcgtcaccgtg
cacaagtcgaaaggcctggagtacccgttggtgtacctgccgttcgccgtcaccgcgcgc
aaggtcgagcggcgcaaccgcagcttcttcgaatacaccgatggcgatggcgtacgccgc
atcgacatggcgctgtccgaggacgcccatgcggcggtggaagcggcccgcatcgaggag
gagctgcgcctgctgtacgtggcgctgacgcgggcgcgccacttcctgtggctgggcgtg
gccgcgctgccggccaaggccaagggcgccaacgtgctgcacgaatcggcgctgggctac
ctgctgaccggcggcgcgccgctgccggccgatgcgctgcaggaacgctggcagcatttg
cgcggcgactgcgccgccatcggcatcgccagtgccggcgtgcccgagcgggtcaccttg
ctgaaccgcgtcgagcacaaaccaccgctgctggaggcggcgccgttcgacgcccagttc
gagcgcgactggtcggtcggcagcttcacgtcgctgacgcgtggcgtccaggtcgaggta
ccggtgccggtgccgcgcgacgcgctggaggcgacgctgctggagggcgaggatggcgac
ccggccgcgagcggcgcggcggtgcaggaagcaccatggcaccgcttcccgcgcggttcc
gtgcccggcaacttcctgcacgagcaactggaatggctggcgcaggaaggcttcgacagc
attcatgatgccggcttcgacgcccgcatcggccgccgcatcgagcgcgccggctggggc
caccggctggaggacacgatcgcctggctgcgcgaactggtcgtcacgcgcttgccgccg
ctgggcgcggcgctgcaggacgttggcatgctgctgcccgagatggagttctggttcccc
agcgagcgcctggccaccggcgcgctggacgcgctgtgccgacgccacctgctggacggc
atggcccgcccaccgttgccgcagcgcgcgctgcacggcatgctgaagggcttttccgac
ctggtgttcgagcacgcagggcgctactgggtgctggactacaaatcgaatgcgctgggc
aaccgcgacagcgcctaccacgcggcggcgctggcgcacggcatggccgagcaccgctac
gacgtgcagggcgcgatctacctgctggcgctgcaccggctgctgcgcagccggctgggc
gaggcgtaccagccggcgcggcacctgggcggcgccgtattctggttcctgcgcggcgtc
ggcaatacgacgacgcgcggctgccacctgatcggcccggacgaagcgttgctggacggc
ctggacgcgctgctgcacgccggcgcgcccgacaccacgatggacgagcaatga
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