Massilia sp. YMA4: DPH57_04240
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Entry
DPH57_04240 CDS
T05528
Symbol
gcvP
Name
(GenBank) glycine dehydrogenase (aminomethyl-transferring)
KO
K00281
glycine cleavage system P protein (glycine dehydrogenase) [EC:
1.4.4.2
]
Organism
masy
Massilia sp. YMA4
Pathway
masy00260
Glycine, serine and threonine metabolism
masy00630
Glyoxylate and dicarboxylate metabolism
masy00670
One carbon pool by folate
masy00785
Lipoic acid metabolism
masy01100
Metabolic pathways
masy01110
Biosynthesis of secondary metabolites
masy01200
Carbon metabolism
Module
masy_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
masy00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
DPH57_04240 (gcvP)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
DPH57_04240 (gcvP)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
DPH57_04240 (gcvP)
00670 One carbon pool by folate
DPH57_04240 (gcvP)
Enzymes [BR:
masy01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
DPH57_04240 (gcvP)
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Gene cluster
GFIT
Motif
Pfam:
GDC-P
GcvP2_C
Beta_elim_lyase
Pyridoxal_deC
Motif
Other DBs
NCBI-ProteinID:
AXA90447
UniProt:
A0A7U5XW24
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Position
complement(950306..953200)
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AA seq
964 aa
AA seq
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MTRTSLTQLEARDAFIARHIGPDAAEQQQMLDTLGYASRAALIDAIVPAHIRNRAALPLG
QFSEPKPEQEALAVLKGLAKKNQVLTSLIGQGYYGTITPGVVLRNIFENPAWYTAYTPYQ
PEISQGRLEAILNFQQAITDLTGMGIANASMLDEGTSAAEAMTLLMRVGKSKSKTFAVAS
DVLPQTLEVVRTRAEPLGIEVKTFDPAELAGVTDAFGVLLQYPGVDGAVRDYRADVEKVK
ANGTMVVVAADLLALTLLTPPGEWGADVVVGNSQRFGVPLGFGGPHAGYMATRDEYKRSM
PGRLVGVTVDQQGNTAYRLALQTREQHIRREKATSNICTAQVLLAVIASMYAVYHGPQGL
KNIAQRVHRYTGVLASYLRTLGYSLTSESYFDTLTIRTDNADALHAAAVANGINLRKIDA
RHVGVSLDETTDRNTLAALWTVFAGKGDATPAAPDFAAVEAEVNQAFPEALARSSDYLTH
PVFNRYHSETEMLRYLRSLADKDLALDRTMIPLGSCTMKLNATSEMIPVTWPEFSNIHPF
APNDQTVGYREMIDQLEQMLCAVTGYAAVSLQPNAGSQGEYAGLLVIQKYHQSRGEGHRN
ICLIPSSAHGTNPASASMVNMQVVVTACDENGNVDLADLKAKAEQHSKNLACVMVTYPST
HGVFEEGIKELCDIVHAHGGQVYIDGANMNALVGVAAPGAFGGDVSHLNLHKTFCIPHGG
GGPGVGPIGVGAHLAEFLPNQRSTGYARNDNGIGAVSAAAYGSASILPISWMYIAMMGAA
GLTAATETAILNANYIARRLAPHYPVLYSGHDGLVAHECILDLRPLTDATGISNEDVAKR
LMDFGFHAPTMSFPVPGTLMIEPTESESKAELDRFIDAMIAIRGEIAKVESGEFDKANNP
LKFAPHTAEVLTADNWDRQYSRETAAYPLPSLRKNKYWPTVGRADNVYGDRNLMCGCAPI
SAYE
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgacccgcaccagcctgacccaactcgaagcccgcgatgcgttcatcgcccgccatatc
ggcccggacgccgccgaacaacagcagatgctcgacaccctcggctacgcctcgcgcgcc
gcgctgatcgacgccatcgtgccggcccacatccgcaaccgtgccgccctgcccctcggc
cagttcagcgagccgaagccggagcaggaagcgctggccgtgctgaagggtctggcgaag
aagaaccaagtgctgacctccctgatcggccagggctattacggcacgatcacgcccggc
gtggtgctgcgcaatatcttcgagaacccggcctggtacaccgcctacaccccgtaccag
ccggagatctcgcaaggccgcctggaagcgatcctgaacttccagcaggccatcaccgat
ttgaccggcatgggcatcgccaacgcgtcgatgctggacgaaggcacgtcggccgccgag
gcgatgacgctcttgatgcgcgtcggtaaatcgaagtcgaagaccttcgccgtggccagc
gacgtgctgccgcagaccctggaagtggtgcgcacccgcgccgagccgctgggcatcgaa
gtgaagacgttcgacccggccgaactggccggcgtgacggacgccttcggcgtgctgctg
cagtacccgggtgtcgacggcgccgtgcgcgactaccgcgccgacgtcgaaaaagtgaag
gccaacggcaccatggtcgtggtggcggccgacctgctggcactgacgctgctcacgcca
ccgggcgaatggggcgcggacgtcgtcgtcggcaacagccagcgcttcggcgtgccgctg
ggcttcggcggcccgcacgccggctacatggccacgcgcgacgaatacaagcgctcgatg
ccgggccgcctggtcggcgtcaccgtcgaccagcagggcaacaccgcctaccgcctggcg
ctgcagacgcgcgaacagcacatccgccgcgaaaaagccacctccaacatctgcaccgcg
caggtgctgctggccgtgatcgcgtcgatgtacgccgtctaccacggcccgcagggcctg
aagaacatcgcccagcgcgtgcaccgctacaccggcgtgctggcctcgtacctgcgtacg
ctgggctactcgctgaccagcgagtcgtacttcgacacgctgacgatccgcaccgacaac
gccgatgcgctgcacgccgccgcggtcgccaacggcatcaacctgcgcaagatcgatgcg
cgccacgtcggcgtgtcgctggacgagaccaccgaccgcaatacgctggccgcgctgtgg
accgtgttcgccggcaagggtgacgcaaccccggccgcgccggacttcgccgccgtcgag
gcggaagtgaaccaggccttccccgaagcgctggcccgctccagcgactacctgacgcac
ccggtcttcaaccgctaccacagcgagacggaaatgctgcgctacctgcgcagcctggcc
gacaaggacctggcgctggaccgcaccatgatcccgctgggctcctgcacgatgaaactg
aacgccaccagcgagatgatcccggtgacgtggccggagttctccaacatccacccgttc
gcgccgaacgaccagacggtcggctaccgcgagatgatcgaccagctggaacagatgctg
tgcgccgtcaccggctacgcggccgtgtcgctgcagccgaacgccggctcgcagggcgaa
tacgcgggcctcctggtgatccagaagtaccaccagtcgcgcggcgaaggccaccgcaac
atctgcctgatcccgtcctccgcgcacggtaccaacccggcttcggcctcgatggtcaac
atgcaggtggtggtgacggcctgcgacgagaacggcaacgtcgacctggccgacctgaaa
gccaaggccgaacagcacagcaagaacctggcgtgcgtgatggtcacctacccgtccacc
cacggcgtgttcgaggaaggcatcaaggaactgtgcgacatcgtgcacgcgcacggcggc
caggtctacatcgacggcgccaacatgaacgcgctggtcggcgtggccgcgccaggcgcg
ttcggcggcgacgtctcgcacctgaacctgcacaagaccttctgcatcccgcacggcggc
ggcggcccgggcgtcggcccgatcggcgtgggcgcgcacctggccgagttcctgccgaac
cagcgttcgaccggctatgcccgcaacgacaacggcatcggcgccgtctcggcggcggcc
tacggctcggcctcgatcctgccgatctcgtggatgtacatcgcgatgatgggcgcggcc
ggcctgacggcggccacggaaacggcgatcctgaacgccaactacatcgcccgccgcctg
gcgccgcattatccggtgctgtattcgggccatgacggcctggtggcgcacgagtgcatc
ctggacctgcgcccgctgacggacgccaccggcatcagcaacgaggacgtggccaagcgc
ctgatggacttcggcttccacgcgccgaccatgagcttcccggtgccgggcaccttgatg
atcgagccgaccgagtcggaatcgaaggcggagctggaccgcttcatcgacgcgatgatc
gccatccgcggcgagatcgccaaggtggaaagcggcgaattcgacaaggccaacaacccg
ttgaaattcgcgccgcacaccgccgaggtactcaccgccgacaactgggatcgccagtac
agccgcgaaacggcggcctacccgctgccgtcgctgcgcaagaacaagtactggccgacc
gtgggccgtgccgacaacgtgtatggcgaccgtaacctgatgtgcggctgcgcgccgatc
agcgcctacgaataa
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