Massilia sp. YMA4: DPH57_05850
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Entry
DPH57_05850 CDS
T05528
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
masy
Massilia sp. YMA4
Brite
KEGG Orthology (KO) [BR:
masy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
masy03032
]
DPH57_05850
03400 DNA repair and recombination proteins [BR:
masy03400
]
DPH57_05850
Enzymes [BR:
masy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DPH57_05850
DNA replication proteins [BR:
masy03032
]
Prokaryotic type
DNA Topoisomerases
DPH57_05850
DNA repair and recombination proteins [BR:
masy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DPH57_05850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Ribosomal_L40e
Motif
Other DBs
NCBI-ProteinID:
AXA90740
UniProt:
A0A7U6B326
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All DBs
Position
1354010..1355209
Genome browser
AA seq
399 aa
AA seq
DB search
MKPEETTALPSAMLAGDAQAAARAAGLRYVTDARPGLSRVPNDGPGFRYLDADGRVIDDE
ATLGRIKSLAIPPAWTDVWICAQANGHLQATGRDARGRKQYRYHPRWRSVRDEVKYERMI
AFGRALPGIRRAVDAALGLPGLPREKVLATIVYLLEATMMRIGNEEYAKENKSFGLTTLR
NRHVRVDGKEVEFHFRGKSGVWHDVKVADRRLARIIGRMRDLPGQELFQYVDDDGERHSI
DSSDVNDYLRTITGEDYTAKDFRTWSGTVLAALALQEFEKFDSETQAKKNVVRAIESVAK
KLGNTPSVCRKCYVHPAVLDAYMDGAELAALRTRAEEELTRDLHDLQPEEAAVLALLQQR
LEREAERAAGKGKAVASPARARTGSRARPAARKVAAVAA
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccgaagaaaccacggcgctgcccagcgccatgctggcgggcgacgcccaggcc
gccgcccgcgccgccggcctgcgctacgtgaccgacgcccggcccggcctgtcccgtgtg
cccaacgatggcccgggctttcgctacctggacgcggacggcagggtgatcgacgacgag
gccacgctgggccgcatcaagtcgctggcgattccgccggcctggacggacgtgtggatc
tgcgcccaggccaacggtcacctgcaggcgacgggccgggatgcgcgcgggcgcaagcag
taccgctaccacccgcgctggcgcagcgtgcgcgacgaagtcaagtacgagcggatgatc
gccttcggccgcgcgctgccgggcatccgccgtgccgtcgacgcggcgctgggcctgccg
ggactgccgcgtgagaaggtcctggcgacgatcgtctacctgctggaggcgacgatgatg
cgcatcggtaacgaggaatatgcgaaggagaacaagtcgttcggcctgaccaccttgcgc
aaccgccacgtgcgggtggacggcaaggaggtcgagttccacttccgcggcaagagcggc
gtctggcacgacgtcaaggtggcggaccggcgcctggcccgcatcatcggccgcatgcgc
gacctgccggggcaggagctgttccagtacgtggacgacgacggtgagcgccattcgatc
gattccagcgacgtcaacgactatctgcgcaccatcaccggagaggactacacggccaag
gacttccgcacctggtccggcaccgtgctggccgcgctggccctgcaggagttcgagaaa
ttcgactccgagacccaggccaagaagaacgtggtgcgcgccatcgagtcggtggcgaaa
aaactgggcaacacgccttcggtctgccgcaagtgctacgtgcatccggccgtgctggac
gcctacatggatggcgccgaactggccgcgctgcgcacccgtgccgaagaggagctgacg
cgcgacctgcacgacctgcagccggaggaggcggccgtgctggcgctgctgcagcagcgc
ctggagcgggaggcggaacgggccgcaggcaagggcaaggccgtggccagcccggcccgg
gccaggaccggcagccgcgcccgcccggcggcacgcaaggtggccgccgtggccgcctga
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