Massilia sp. YMA4: DPH57_06780
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Entry
DPH57_06780 CDS
T05528
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
masy
Massilia sp. YMA4
Pathway
masy03030
DNA replication
masy03430
Mismatch repair
masy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
masy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DPH57_06780
03430 Mismatch repair
DPH57_06780
03440 Homologous recombination
DPH57_06780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
masy03032
]
DPH57_06780
03400 DNA repair and recombination proteins [BR:
masy03400
]
DPH57_06780
Enzymes [BR:
masy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DPH57_06780
DNA replication proteins [BR:
masy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DPH57_06780
DNA repair and recombination proteins [BR:
masy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DPH57_06780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
AXA90891
LinkDB
All DBs
Position
complement(1576396..1577019)
Genome browser
AA seq
207 aa
AA seq
DB search
MLAAPVVMLDFETTGLSPDMGDRITEVAALRIADGRIVERYVSLVNCHVRIPPFITSLTG
ITQAMVDSAPPATEVVPRLLEFIGGDTLAAHNASFDEKFLRAEGGRLGLVPGHDGTVCSL
KLSRRVFPQLGSYKLGVLSGRLGIPFRGTAHRAEADAEVAAELLLHIGRHLANSYGIARV
DAALLHSVNKLAAAKVHAFLQKHAAAA
NT seq
624 nt
NT seq
+upstream
nt +downstream
nt
atgctggccgcgccggttgtcatgctggacttcgaaaccacggggctgtcgcccgacatg
ggcgaccgcatcacggaagtggcggcgctgcgcatcgccgacggccgcatcgtcgagcgc
tacgtctcgctggtcaactgccacgtgcgcattccgcctttcatcaccagcctgaccggc
atcacgcaggccatggtggacagcgcgccgccggccacggaagtggtgccgcgcctgctg
gagttcatcggcggcgacacgctggccgcccacaacgccagtttcgacgagaaattcctg
cgcgctgagggcggccggctcggcctggtgccgggacatgacggcaccgtctgttcgctc
aagctgtcgcgccgcgtgtttccccagctgggcagctacaagctgggcgtgctgagcggg
cgcctgggcattccgttccgcggcacggcgcaccgggccgaggccgatgccgaggtggcg
gccgaactgctgctgcacatcggccggcatctggccaacagctatggcattgcccgcgtc
gacgcggcattgctgcactccgtcaacaagctggccgccgccaaggtccacgctttcctg
cagaagcacgcggccgccgcctag
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