Massilia sp. YMA4: DPH57_07440
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Entry
DPH57_07440 CDS
T05528
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
masy
Massilia sp. YMA4
Pathway
masy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
masy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DPH57_07440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
masy03400
]
DPH57_07440
Enzymes [BR:
masy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DPH57_07440
DNA repair and recombination proteins [BR:
masy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DPH57_07440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
AAA_30
CTE_SPB4
SKI
ERCC3_RAD25_C
AAA_25
HemY_N
Motif
Other DBs
NCBI-ProteinID:
AXA91010
UniProt:
A0A7U6B3D2
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All DBs
Position
1738000..1741437
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AA seq
1145 aa
AA seq
DB search
MPFDLNKALPKPGNRFVLPALYGSADAWALAQAALALKGRGQMLAVIVAQASDGQRLLDE
IPWFAPALRCHLLPDWETLPYDAFSPHQDLVSERLATLHEIRSGQCDVMIVPATTALVRM
APPSFLAAYTFFFKQGEALDEAALKSQLTLAGYSHVTQVMSPGEYSVRGGLIDLFPMGSA
LPYRLDLFGDTIESIRTFDADTQRSLYPVKEVRLLPGREFPMDEAARTTFRSRWRETFEG
DPSRAVVYKDISSGIASAGIEYYLPLFFEETATLFDYLPEGAALALVGDIDGAIRRFWAD
TESRYKFLKSDRERPLLPPESIFLRDEAFFTCAKRHARVAIGRDADGAPSELSAPIPNVA
VNRHLDDPLINLRAYLLQPGRRVMMCADSNGRRETLQQYFAEFGLQPALVEGYEGFLASD
APFALGVAPLQQGFELALDAPLAFITETELYAGSGRRVGKKKQEAVTQVESMVRDLSELK
IGDPVVHINHGIGRYMGLVSMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGGAPE
DAPLHALGSGQWEKAKKKAADQVRDTAAELLNLYARRAARQGHAFEYSSHDYERFAESFG
FDETPDQAAAIMNVIKDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAILAPT
TLLAEQHAQTFADRFADWPVKIAEMSRFRTGKEIANAIKGMADGTLDIVIGTHKLLSEDV
KFTRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIAT
APQKRLAIKTFVRSEGESIIREAVLRELKRGGQVYFLHNEVETIQNRLAQLTELLPEARI
AVAHGQMHERDLEKVMRDFVAQRYNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQ
LRGRVGRSHHQAYAYLLVNDVQSLSKQAQRRLDAIQQMEELGSGFYLAMHDLEIRGAGEV
LGENQSGEMLEVGFQLYTDMLNEAVRSLKAGKEPDLAAPLSTTTEINLHVPALLPADFCG
DVHERLSIYKRLANCETQDAIDGLQEELIDRFGKLPDPAKALVETHRLRIAAKTVGIVKI
DAHGEAANLQFMPKPPIDPMRIITLIQKNRHIKLNGQDKLKITASMPDLPARVAQIKTAI
RQLTA
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgcctttcgacctgaacaaagcccttcccaagcccggcaaccgtttcgtgctgccagcg
ttgtatggttccgccgacgcctgggcgctggcccaggccgcgctggcgctgaaaggccgg
ggccagatgctggccgtgatcgtggcccaggccagcgacggccagcgcctgctggacgaa
atcccatggttcgcgccggcgctgcgctgccacctgctgccggactgggaaacgctgccg
tacgacgcgttctcgccgcaccaggacctggtgtccgaacgcctggccacgctgcatgaa
atccgcagcggccagtgcgacgtgatgatcgtgcccgccaccacggcgctggtgcgcatg
gcgccgccctccttcctggccgcctatacgttcttcttcaagcagggcgaagcgctggac
gaggcagcgctgaaatcgcagctgaccctggccggctactcgcacgtgacccaggtgatg
tcgcccggcgaatactcggtgcgcggcggcctgatcgacctgttcccgatgggctccgcg
ctgccgtaccggctcgacctgttcggcgacacgatcgagtcgatccgcaccttcgacgcc
gacacccagcgctcgctctacccggtcaaggaagtgcgcctgctgccggggcgcgagttc
ccgatggacgaggcggcgcgcaccacgttccgcagccgctggcgcgagacgttcgagggc
gatccgtcgcgcgccgtggtctacaaggacatcagcagcggcatcgcgtcggccggcatc
gagtactacctgccgctgttcttcgaagagacggccacgctgttcgactacctgccggaa
ggcgccgccctggcgctggtgggcgacatcgacggcgccatccgccgcttctgggccgat
accgagtcgcgctacaagttcctgaagtcggaccgcgagcgcccgctgctgccgccggaa
tcgatcttcctgcgcgacgaggcgttcttcacctgcgccaagcgccatgcccgcgtggcc
atcgggcgcgacgccgacggcgcgccctccgagctgtccgcgccgatccccaacgtggcc
gtcaaccgccacctggacgatcctttgatcaacctgcgcgcctacctgctgcagccgggc
cggcgcgtcatgatgtgcgcggactcgaacggccggcgcgagaccttgcagcaatacttc
gccgagttcggcctgcagccggcgctggtcgaaggctacgagggcttcctcgcgtccgat
gcgcccttcgccctgggcgtggcgccactgcagcagggcttcgagctggcgctggacgcg
ccgctggcgttcatcacggagacggagctgtacgccggctccgggcgccgggtcggcaag
aagaagcaggaggccgtgacgcaggtcgagtcgatggtgcgcgacctgtccgagctgaag
atcggcgacccggtcgtgcacatcaaccatggcatcggccgctacatgggcctggtcagc
atggacctgggcgaaggcgagaccgaattcctgcacctggaatacgccaaggacaccaag
ctgtacgtgccggtctcgcagctgcacgtgatctcgcgctactccggcggcgcgcccgag
gacgccccgctgcacgcgctgggctcgggtcagtgggaaaaggccaagaagaaggctgcc
gaccaggtgcgcgacacggcggccgagctgctcaacctgtatgcgcgccgcgccgcacgc
cagggtcacgcgttcgaatattcgtcgcacgactacgagcgcttcgccgagagcttcggc
ttcgacgagacgccggaccaggccgcggccatcatgaacgtcatcaaggacatgacctcg
ggcaagccgatggaccggctggtgtgcggcgacgtcggcttcggcaagaccgaagtggcg
ctgcgcgcggccttcatcgccgtcatgggcggcaagcaggtcgccatcctcgcccccacc
accctgctggccgagcagcacgcgcagaccttcgccgaccgcttcgccgactggcccgtg
aagatcgccgagatgtcgcgctttcgcaccggcaaggagatcgccaacgccatcaagggc
atggcggacggcacgctggacatcgtcatcggcacgcataaactgttgtcggaggacgtc
aagttcacccgcctggggctcgtcatcatcgacgaggagcaccgcttcggcgtgcgccag
aaggaggcgctgaaatcgctgcgcgccgaggtggacgtgctgaccttgacggccacgccg
atcccgcgcacgctgggcatggcgctggaaggcctgcgcgacttctccgtcattgccacc
gcgccgcaaaagcgcctggcgatcaagaccttcgtgcgcagcgaaggggaatcgatcatc
cgcgaggccgtgctgcgcgaactcaagcgcggcggccaggtgtacttcctgcacaacgag
gtcgagaccatccagaaccgcctggcccagctgaccgaactgctgccggaggcgcgcatc
gccgtggcgcacggccagatgcacgagcgcgacctggaaaaggtgatgcgcgacttcgtg
gcgcagcgctacaacatcctcctgtgcaccacgatcatcgagaccggcatcgacgtgccg
acggcgaacacgatcatcatgcaccgggccgacaaattcggcctggcccagctgcaccag
ctgcgcggccgcgtgggccgttcgcaccaccaggcctatgcctacctgctcgtcaacgac
gtgcagagcctgtcgaaacaggcgcagcgccggctcgacgcgatccagcagatggaggaa
ctgggcagcggcttctacctggccatgcacgacctggaaatccgcggcgccggcgaggtg
ctgggcgagaaccagtccggcgagatgctggaagtgggcttccagctgtacaccgacatg
ctgaacgaggcggtacgctcgctcaaggccggcaaggagcccgacctggcggcgccgctg
tcgaccacgacggagatcaacctgcacgtgccggccctgctgccggccgacttctgcggc
gacgtgcacgagcgcctgtcgatctacaagcgcctggccaactgcgagacgcaggacgcc
atcgacggcctgcaggaagagctgatcgaccgcttcggcaagctgcccgacccggccaag
gcgctggtcgagacgcaccggctgcgcatcgccgcgaagaccgtgggaattgttaaaatc
gacgcgcatggcgaagcagccaacctgcagttcatgccgaagccgcccatcgacccgatg
cgcatcatcaccctgatccagaagaaccgccacatcaagctcaatggccaggacaaactg
aagatcaccgccagcatgccggacctgccggcgcgcgtggcgcagatcaagaccgcgatc
agacagctgaccgcctga
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