KEGG   Massilia sp. YMA4: DPH57_09035
Entry
DPH57_09035       CDS       T05528                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
masy  Massilia sp. YMA4
Pathway
masy02020  Two-component system
Brite
KEGG Orthology (KO) [BR:masy00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    DPH57_09035
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:masy03021]
    DPH57_09035
Transcription machinery [BR:masy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     DPH57_09035
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 PhyR_sigma-like Sigma70_ECF Phage_terminase HTH_24 HTH_28 HTH_11 HTH_Mga MerR Rv2175c_wHTH YceM-like_C HTH_AsnC-type HTH_23 PCI
Other DBs
NCBI-ProteinID: AXA91282
LinkDB
Position
2132397..2132900
AA seq 167 aa
MTLAPTLLRQQFLHHEFRHSYGWLTASMHRLTGSRHDAEDLAASAFTELVALDDVSQVRQ
PRALLTTIARRLTFELWRRRDLERAHLAELAQRPECHAPSAQDVCLGVEEVARIDAALNR
LGPRVRTAFLLSQYDELAYADIAARLGVSASMVRKYVAQARTACLVA
NT seq 504 nt   +upstreamnt  +downstreamnt
atgactctcgccccaacgctacttcgccagcaattcctgcatcatgaattccgccacagc
tacggctggctgaccgccagcatgcaccgcctgaccggctcgcgccacgacgccgaggac
ctggccgcatcggccttcacggagctggtcgcgctggacgacgtcagccaggtgcgccag
ccgcgcgcgctgttgacgaccatcgcgcgccgcctcacgttcgagctgtggcgccggcgc
gacctggaacgcgcccacctggccgagctggcgcaacgccccgaatgccacgcgccatcg
gcacaggacgtctgcctgggcgtcgaggaggtcgcccgcatcgacgccgcgctgaaccgg
ctcggcccgcgcgtgcgcaccgcgttcctcctgagccagtacgacgaactggcctatgcc
gacatcgccgcacggctgggcgtctccgccagcatggtgcgcaagtacgtggcgcaggca
cggaccgcctgccttgttgcctga

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