Massilia sp. YMA4: DPH57_09820
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Entry
DPH57_09820 CDS
T05528
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
masy
Massilia sp. YMA4
Pathway
masy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
masy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
DPH57_09820
09124 Replication and repair
03420 Nucleotide excision repair
DPH57_09820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
masy03021
]
DPH57_09820
03036 Chromosome and associated proteins [BR:
masy03036
]
DPH57_09820
03400 DNA repair and recombination proteins [BR:
masy03400
]
DPH57_09820
Enzymes [BR:
masy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
DPH57_09820
Transcription machinery [BR:
masy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
DPH57_09820
Chromosome and associated proteins [BR:
masy03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
DPH57_09820
DNA repair and recombination proteins [BR:
masy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
DPH57_09820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AXA91423
UniProt:
A0A7U5XXX8
LinkDB
All DBs
Position
2330797..2333097
Genome browser
AA seq
766 aa
AA seq
DB search
MAGVTATTAAPPRYTVAVRALCEFTAKTGDLDLRFTPSPTAQEGIAGHAVVSARRDDDYE
REIALSGQWGPLHVRGRADGYDPRNHQLEEVKTYRGDLARMPANHRALHWAQLKVYGHLL
CQARALASVRLALVYFDIGSQKETVLAEQHDAAALRAVFEAHCAAFVGWAEQELAHRTAR
DAQLAALAFPHPTFRPGQRELAEAMFKASSRSCALLAQAPTGIGKSIGSLFPLLKAAPRH
ALDKIFFLAAKTSGRQMALDAVTRLRESAPLLPLRTLELTAKSRACEHPDLACHGEACPL
ARGFYDRLPAARAAALALPLLDRASVRAAALAHDVCPYYLQSELARWADVIVGDYNYYFD
FSALLHSLTVQNDWRVAVLVDEAHNMVSRARAMYSADLEHGTLRALKKTAPAALAKPLDR
VHRQWLALEKEQDEEYRALAALPEKFMGALQTATTAIGDYLAENPAWFDADVLDFYFQGL
HFARLAESFGDHSLFDVTLTTSRAGKRGSTLCLRNIVPAPFLQPRFAAARSVALFSATLS
PWNYYADTLGMPADTAWVDVASPFAADQLAVHVASHISTRWQHRDRSLAPIAALMGAQYE
RQPGNYLAFFSSFDYMEKAADLFQARHPDVPVWRQARGMDEGARDAFLARFTADGQGIGF
AVLGGAFGEGIDLPGARLIGAFVATLGLPQLNPVNEGIRRRMDAIFGAGYDYTYLYPGLQ
KVVQAAGRVIRTTTDRGTVHLIDDRFGRPEIQALLPAWWRIGPAVS
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcgtgacggcgacgacggccgcgccgccgcgctacacggtggcggtgcgcgcg
ctgtgcgagttcacggccaagacgggcgacctcgacctgcgcttcacgccctcgcccacg
gcgcaggaaggcatcgccggccatgcggtcgtcagcgcgcggcgcgacgacgactacgaa
cgcgagatcgccctgtccggccagtggggcccgctgcacgtacgcggccgcgccgatggc
tacgatccgcgcaaccaccagctggaagaggtcaagacctaccgcggcgacctggcgcgc
atgccggccaaccaccgcgcgctgcattgggcgcagctgaaggtgtacggccacctgctg
tgccaggcccgcgcgctggccagcgtgcgcctggccctggtctacttcgacatcggcagc
cagaaggagacggtgctggccgagcagcacgacgccgccgcgctgcgcgccgtgttcgag
gcgcattgcgccgccttcgtcggctgggccgagcaggagctggcgcaccgcacggcgcgc
gacgcgcagctggcggcactggcgttcccccatcccacgttccggcccggccagcgcgaa
ctggccgaggccatgttcaaggccagcagccgctcgtgcgcgctgctggcgcaggcgccg
accgggatcggcaagagcatcggcagcctgttcccgctgctgaaggccgcgccccggcac
gctctggacaagatcttcttcctcgccgcgaaaacctccggccggcagatggcgctggac
gccgtcacgcgcctgcgcgagagcgcgccgctgctgccgttgcgcaccctggagctgacg
gcgaagagccgcgcctgcgagcatccggacctggcctgccatggcgaagcatgcccgctg
gcgcgcggcttctacgaccggctgccggccgcgcgtgccgccgcactggcgctgccgttg
ctggaccgggcatcggtgcgcgcggccgcgctggcgcacgacgtctgcccgtattacctg
caaagcgaactggcgcgctgggccgacgtgatcgtgggcgactacaactactacttcgac
ttctccgccctgctgcattccctgacggtgcaaaacgactggcgcgtggccgtgctggtg
gacgaggcccacaatatggtctcgcgtgcccgcgccatgtactcggccgacctggaacac
ggcactttgcgcgcgctgaagaagacggcgccggcggcgctggccaagcccctggaccgg
gtgcaccgccagtggctcgccctggaaaaggaacaggacgaggagtaccgcgcgctggcg
gcgctgccggaaaaattcatgggcgcgctgcagacggcgacgacggccatcggcgactac
ctggccgagaacccggcctggttcgacgccgacgtgctggacttctatttccagggcctg
cacttcgcccggctggcggaaagcttcggcgaccactcgctgttcgacgtgacgctgacc
acgtcgcgtgccggcaagcgcggctccacgctgtgcctgcgcaatatcgtgccggccccg
ttcctgcagccgcgttttgccgcggcccgttcggtggcgctgttctcggccaccctgagc
ccctggaactactacgccgacaccttgggcatgccggccgatacggcatgggtggatgtc
gcctcgcccttcgcagccgaccagctggcagtgcacgtggccagccatatctcgacgcgc
tggcagcaccgcgaccgctcgctcgcgcccatcgcggcgctgatgggcgctcagtacgaa
cgccagcccggcaactacctggcgttcttcagcagtttcgactacatggaaaaggcggcc
gacctgttccaggcccggcatcccgacgtgccggtatggcgccaggcccgcggcatggac
gaaggcgcgcgcgacgccttcctggcccgcttcacggccgacggccagggcatcggcttc
gccgtgctgggtggcgcgttcggcgaaggcatcgacctgcccggcgcgcgcctgatcggc
gccttcgtcgccaccctgggcctgccccagctgaaccccgtcaacgaaggcatccgccgg
cgcatggacgcgattttcggcgccggctacgactacacctacctgtacccgggcctgcag
aaagtcgtgcaggcggctggccgcgtgatccgcaccaccaccgaccgcggcaccgtgcac
ctgatcgacgaccgcttcggccggccggagatccaggcgctgctgccggcctggtggcgc
atcggcccggccgtcagctga
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