Massilia sp. YMA4: DPH57_15880
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Entry
DPH57_15880 CDS
T05528
Symbol
xth
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
masy
Massilia sp. YMA4
Pathway
masy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
masy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DPH57_15880 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
masy03400
]
DPH57_15880 (xth)
Enzymes [BR:
masy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
DPH57_15880 (xth)
DNA repair and recombination proteins [BR:
masy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
DPH57_15880 (xth)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
AXA92494
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All DBs
Position
3725009..3725779
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AA seq
256 aa
AA seq
DB search
MPKIISANLNGIRSAAKKGFFNWMGTQSADFICVQELKAQAADMTEEFLNPHGYHGHFHY
AEKKGYSGTGIYSKIAPDAVKIGFGSPEFDAEGRYVRADFGDLTIISVYCPSGSSSPERQ
EAKFRFMDLFLPHLTQLRAEGREVVICGDWNIAHKEIDLKNWKGNVKNSGFLPEERAWLT
RVFDECGYVDVHRGLDPRPEQYTWWSNRGQAYAKNVGWRIDYHVATPGIAGCAKAVSVYK
DEKFSDHAPLIIEYAR
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaatcatctccgccaacctgaacggaatccgttccgccgccaagaagggcttt
ttcaactggatgggaacgcagtcggcggatttcatctgcgtgcaggagctgaaagcgcag
gcggccgacatgacggaagagttcctgaatccgcacggctaccacggccacttccactac
gccgagaaaaaaggctactccggcaccggcatctacagcaaaatcgcgccggacgccgtc
aagatcggcttcggcagtcccgaattcgatgccgagggccgctatgtgcgcgccgacttc
ggcgacctgaccatcatttccgtgtactgcccgtccggctcctcctcgccggaacgccag
gaagcgaagttccgcttcatggacctgttcctgccgcacctgacgcagctgcgcgcggaa
ggccgcgaagtcgtcatctgcggcgactggaacatcgcgcacaaggaaatcgacctgaag
aactggaagggcaacgtcaagaactccggcttcctgcccgaggaacgggcctggctgacg
cgcgtgttcgacgaatgcggctacgtggatgtgcatcgcggcctcgatccgcgcccggaa
cagtacacctggtggagcaaccgcggccaggcctacgcgaagaacgtgggctggcgcatc
gattaccacgtcgcgacgccaggcatcgccggctgtgccaaggcggtctcggtgtacaag
gacgagaagttttcggatcatgcgccgttgatcatcgagtacgcgcgctaa
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