Massilia sp. YMA4: DPH57_16055
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Entry
DPH57_16055 CDS
T05528
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
masy
Massilia sp. YMA4
Brite
KEGG Orthology (KO) [BR:
masy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
masy03016
]
DPH57_16055
Enzymes [BR:
masy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DPH57_16055
Transfer RNA biogenesis [BR:
masy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DPH57_16055
Prokaryotic type
tRNA splicing ligases
DPH57_16055
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AXA92523
LinkDB
All DBs
Position
complement(3766610..3767854)
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AA seq
414 aa
AA seq
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MNKQDSTDYDTMDVPGGRPVKMWTHGVPVEAEAKQQLANTARMPFIYKHIAVMPDVHLGK
GSTIGSVIPTLGAVIPAAVGVDIGCGMMAAKTTLTASDLPDNLGPLRSAIEKAIPHGLSP
RTRGFKGRDEGSWQNPPSAVDAAWMRLKDDFDVICAKTPKLRHTNNYKHLGTLGTGNHFI
EVCLDEDNAVWLMLHSGSRGVGNAIGTHFIELAQQDMRMHIANLPDRDLAYLKEGTQHYD
DYVEAVDWAQRFARMNREVMMQNLIGAVRSVIRKPFETHVEAVNCHHNYVQKERHFGQDV
LVTRKGAVSAKRGELGIIPGSMGARSYIVRGKGNEESFTSCSHGAGRTMSRSEAKRRFTR
EDQVKATAGVECRKDAGVVDEIPMAYKDIDAVMHAQRDLVEVVHTLKQVVCVKG
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgaataaacaggattcaacggattacgacacgatggacgtgcccggcggccggccggtc
aagatgtggacgcatggcgtgcccgtggaggcggaagccaaacagcagctggccaatacg
gcgcgcatgcctttcatttacaagcacatcgccgtgatgcccgacgtccacctgggcaag
ggctcgaccatcggcagcgtcatcccgacgctgggcgccgtcatcccggccgccgtcggg
gtagatatcggctgcggcatgatggccgccaagacgacgctgaccgccagcgacctgccg
gacaatctggggccgctgcgcagcgccatcgaaaaggccattccgcacggcctgtcgccc
cggacgcgcggcttcaagggacgcgacgaaggctcctggcagaacccgccatcggcggtg
gacgccgcctggatgcggctgaaggacgacttcgacgtcatctgcgccaagacgcccaag
ctgcgccacaccaacaactacaagcatctcggcacgctcggcacgggcaaccatttcatc
gaggtctgtctggacgaggacaatgcggtgtggctgatgctgcattccggctcgcgtggc
gtgggcaacgccatcggcacgcacttcatcgaactggcgcagcaggacatgcgcatgcac
atcgccaacctgccggaccgcgacctggcttacctgaaggaaggcacgcaacactacgac
gactatgtggaggcggtcgattgggcccagcgcttcgcgcggatgaaccgggaagtaatg
atgcagaacctgatcggtgccgtgcgcagcgtgatccgcaaaccgttcgagacgcacgtg
gaggccgtcaactgccaccacaactatgtgcagaaggagcgccatttcggccaggacgtg
ctggtcacgcgcaagggcgccgtctccgcgaaaagaggggagctgggcatcatccctggt
tcgatgggcgcgcgcagctatatcgtgcgcggcaaaggcaacgaggaaagcttcaccagc
tgcagccatggcgcggggcgcacgatgagccgcagcgaggcaaaacggcggttcacgcgc
gaagaccaggtgaaggccaccgccggcgtcgaatgccgcaaggacgcaggcgtggtggac
gagatcccgatggcctacaaggacatcgacgcggtgatgcacgcacagcgcgacctggtc
gaggtggtgcacacgctcaagcaggtcgtttgcgtgaagggctga
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