Massilia sp. YMA4: DPH57_21650
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Entry
DPH57_21650 CDS
T05528
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
masy
Massilia sp. YMA4
Brite
KEGG Orthology (KO) [BR:
masy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
masy03032
]
DPH57_21650 (gyrB)
03400 DNA repair and recombination proteins [BR:
masy03400
]
DPH57_21650 (gyrB)
Enzymes [BR:
masy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
DPH57_21650 (gyrB)
DNA replication proteins [BR:
masy03032
]
Prokaryotic type
DNA Topoisomerases
DPH57_21650 (gyrB)
DNA repair and recombination proteins [BR:
masy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DPH57_21650 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
Toprim_4
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
AXA93521
UniProt:
A0A7U5Y1Y1
LinkDB
All DBs
Position
complement(5043083..5045581)
Genome browser
AA seq
832 aa
AA seq
DB search
MSESQNAPQIPAKQEEYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSI
DEALAGYCSEIHVTIHSDNSISITDNGRGIPVGLKMDDKHEPKRSAAEIVLTELHAGGKF
DQNSYKVSGGLHGVGVSCVNALSKLLRVTIRRDGKVHQMEFVRGVPQNRELEMRDGVQVS
PIKVIGETDKRGTDVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVNIKLTDQRNGKE
EVFAFEGGTRGFVEYINKAKNVLHPTVFQATGERQSDQGTTISVDVSMQWNDAFNEQVLC
FTNNIPQRDGGTHLTGLRAAMTRVINKYIDENDFAKKAKVEIAGDDMREGLTCVLSVKVP
EPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLMEKPNDAKIICGKIVEAARAREAARKA
RDLTRRKGVLDGLGLSAKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLRG
KVLNVEKARFEKMLSSEQITTLIATLGTSIGPDEFNADKLRYHRIIIMTDADVDGAHIRT
LLLTLFYRQMPQLVERGHVYIAQPPLYKVKAGRDERYLKDDLEEATYMMTVALNTAVLTP
REGADPITGEPLAELARQYNLANAVMTRLTRVIDRAALTAIMTGVKLDLSTLDAARASAQ
ALSDNIGDASVTVSVRSDELSEKHLLWIERMHHGNVKVSTIDADFVGGSDYAVLSKAAET
FTGLIGEGALIRRGEGERTKESAVVDFHHAMNWLRDEAERTVSKQRYKGLGEMNPEQLWE
TTMDPTVRRLLKVQIEDAIAADQIFTTLMGDDVEPRRNFIESNALRAGNIDV
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaagccagaacgcaccacaaatcccggcaaaacaggaagagtacggcgcatcg
tcgatccagatcctcgaaggtctggaggcagtccgcaagcgccccggcatgtatatcggt
gacacctcggacggcaccggcctgcaccacctcgtgttcgaagtgctggacaactcgatc
gacgaagcgctggcgggctactgctccgagatccacgtgacgatccactcggacaactcg
atctcgatcaccgacaacggccgcggcatcccggtcggcctgaagatggacgacaagcac
gagccgaagcgctcggccgcggagatcgtgctgacggagctgcacgcgggcggtaaattc
gaccagaactcgtacaaggtgtccggcggcctgcacggcgtgggcgtctcgtgcgtgaac
gcgctgtcgaaactgctgcgcgtgacgatccgccgcgacggcaaggtgcaccagatggaa
ttcgtgcgcggcgtgccgcagaaccgcgaactggaaatgcgcgacggcgtgcaggtctcg
ccgatcaaggtcatcggcgaaaccgacaagcgcggcaccgacgtgcacttctgggccgac
gaagagatcttcacgcacgtggagttccactacgagatcctggccaagcgcatccgcgaa
ctctcgttcctgaacaacggcgtcaacatcaagctgaccgaccagcgcaacggcaaggaa
gaagtgttcgcgttcgaaggcggcacgcgcggcttcgtcgaatacatcaacaaggccaag
aacgtgctgcacccgaccgtgttccaggccaccggcgagcgccagtccgaccagggcacg
acgatctcggtggacgtgtcgatgcaatggaacgacgcgttcaacgagcaggtgctgtgc
ttcaccaataacatcccgcagcgcgacggcggcacccacctgaccggcctgcgcgccgcg
atgacgcgcgtgatcaacaagtacatcgacgagaacgacttcgcgaaaaaggcgaaagtc
gaaatcgccggcgacgacatgcgcgaaggcctgacctgcgtgctgtcggtgaaggtgccg
gaaccgaagttctcgtcgcagacgaaagacaagctggtgtcgtcggaggtgcgcggcccg
gtcgaggaaatcgtcgcgaagacgctgacggacttcctgatggagaagccgaacgacgcc
aagatcatctgcggcaagatcgtcgaggcggcgcgtgcgcgcgaagcggcccgcaaggcc
cgtgacctgacgcgccgcaagggcgtgctggacggcctgggcctgtcggccaagctggcc
gactgccaggaaaaggacccggcgctgtccgagctgtacatcgtcgagggtgactcggca
ggcggttcggccaagcagggccgcgaccgtaaattccaggccatcctgccgctgcgcggc
aaggtactgaacgtggaaaaggcacgcttcgagaagatgctgtcctccgagcagatcacc
acgctgatcgccacgctcggcacgtcgatcggtccggacgaattcaacgccgacaagctg
cgctatcaccgcatcatcatcatgaccgacgcggacgtcgacggcgcccacatccgcacg
ctgctcctgacgctgttctaccgccagatgccgcagctggtcgagcgcggccacgtctac
atcgcccagccgccgctgtacaaggtcaaggccggccgcgacgagcgctacctgaaggac
gacctggaagaagcgacgtacatgatgacggtcgcgctgaacacggcggtgctgacgccg
cgcgaaggcgccgacccgatcaccggcgagccgctggccgaactggcgcgtcagtacaac
ctggccaacgccgtcatgacgcgcctgacgcgcgtgatcgaccgcgccgcgctgaccgcg
atcatgaccggcgtgaagctggacctgtcgacgctggacgccgcgcgcgcctcggcgcag
gcgctgtcggacaatatcggcgacgccagcgtgacggtctcggtgcgttcggacgagctg
tcggaaaagcacctgctgtggatcgagcgcatgcaccacggtaacgtcaaggtcagcacg
atcgacgccgacttcgtgggcggctccgactacgccgtgctgtcgaaggcggccgaaacc
ttcacgggcctgatcggcgaaggcgccctgatccgccgcggcgaaggcgagcgcaccaag
gaatcggccgtggtggacttccaccacgcgatgaactggctgcgcgacgaagcggaacgc
accgtatccaagcagcgctacaagggtctgggcgagatgaatcccgagcagctgtgggaa
acgacgatggacccgaccgtgcgccgtctgctgaaggtgcagatcgaggatgcgattgcc
gccgaccagatcttcacgaccctgatgggcgacgatgtcgagccgcgccggaactttatc
gagtcgaatgcgctgcgggcggggaatatcgacgtttga
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