Massilia sp. YMA4: DPH57_22850
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Entry
DPH57_22850 CDS
T05528
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
masy
Massilia sp. YMA4
Pathway
masy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
masy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DPH57_22850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
masy03021
]
DPH57_22850
03400 DNA repair and recombination proteins [BR:
masy03400
]
DPH57_22850
Enzymes [BR:
masy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DPH57_22850
Transcription machinery [BR:
masy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DPH57_22850
DNA repair and recombination proteins [BR:
masy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DPH57_22850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
HHH_XRCC3_RpoA
DUF7219
Motif
Other DBs
NCBI-ProteinID:
AXA93732
LinkDB
All DBs
Position
5307857..5308834
Genome browser
AA seq
325 aa
AA seq
DB search
MQNSLLKPRIIDVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAG
VVHEYSSLDGVQEDVVDLLLNLKGVVFKVHNRDSVTLTLKKEGEGAVLASDIDLPHDVEL
INPDHVIAHLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS
YAVESARVEQRTDLDKLIINIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEAAAEAP
SRAPLVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI
KEVLASRGLTLGMKLENWPPAGLEK
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacagtttgttgaagccacgtatcatcgacgtcgaagccctgggcgccggtcac
gccaaagtcgtgatggagccgttcgagcgcggctacggccacacgctgggcaacgccctg
cgtcgcgtgctgctgtcgtcgatgatcggctacgcgccgaccgaagtcaccatcgccggt
gtcgtgcacgagtactcctcgctggacggcgtgcaggaagacgtggtcgacctgctgctg
aacctgaagggcgtggtcttcaaggtccacaaccgcgattccgtcacgctgaccctgaag
aaggaaggcgaaggcgccgtgctggcatcggatatcgacctgccgcacgacgtggaactg
atcaacccggatcacgtgatcgctcacctgaccgccggtggcaagctggacatgcagatc
aaggtcgagaagggccgcggctacgtgcctggtaacgtgcgtcgcctgtccgaagacacg
aacaagacgatcggccgcatcatcctggacgcatcgttctcgccagtgcgccgcgtttcc
tacgctgtcgaatcggcgcgtgtggaacagcgtaccgacctggacaagctgatcatcaac
atcgaaacgaacggcgtcatcacgccggaagaagcgatccgccagtcggcacgtgtgctg
gtcgaccagctgaacgtgttcgctgcgctggaaggcacggaagccgccgccgaagcaccg
tcgcgtgcgccgctggtcgatccgatcctgctgcgtccggtggacgacctggaactgacc
gtccgttccgcgaactgcctgaaagccgaaaacatctactacatcggcgatctgatccag
cgttcggaaaacgaactgctgaagaccccgaacctgggtcgcaagtcgctgaacgagatc
aaggaagtgctggcatcgcgcggcctgaccctgggcatgaagctggaaaactggccgcct
gcaggtctggagaagtaa
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