Massilia sp. YMA4: DPH57_26305
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Entry
DPH57_26305 CDS
T05528
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
masy
Massilia sp. YMA4
Pathway
masy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
masy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DPH57_26305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
masy03019
]
DPH57_26305
03009 Ribosome biogenesis [BR:
masy03009
]
DPH57_26305
Enzymes [BR:
masy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DPH57_26305
Messenger RNA biogenesis [BR:
masy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DPH57_26305
Ribosome biogenesis [BR:
masy03009
]
Prokaryotic type
rRNA processing factors
DPH57_26305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AXA94335
UniProt:
A0A7U5Y3X2
LinkDB
All DBs
Position
complement(6145273..6148470)
Genome browser
AA seq
1065 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSY
GEDRHGFLPFKEVARSYFREGVDVRNATVKEALREGQEIMVQVEKEERGNKGAALTSFIS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELRETMDKLDLPQGMSVIARTAGIGRTVEELQ
WDLNYLMQLWRAIEGASKAASGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDEIYEQAH
QFMSHVMPDMVHRVKRYSDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARATRGSDIETTAFHTNCEAAEEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQR
LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCSGTGHIRDTESSALQ
VLRIIQEEAMKENSAAIHVQVPVDVAAFLLNEKRGEVLKIENRHRITVILVPNKHLDTPH
YKLERIKHDDPRLEDTAASYTMAEQAETDMAFAKRQKEEAKPRQEAVVKTITPSQPAPMV
DRKPAEPVAPVAPPPAPLAAPPAEQGFFAKLVSFFTGKQPEPVAPPTPAIVAKPVAPSAD
RTDKNARGPRARGRNGKGPRDEREPGSREEGVKPAAAEGRPARPPRPPREPREPREVREP
REAVEGQAAPAARAERPERAERPERAERPERAPRPPREPREAREPREPKAQPAEAKAEEL
ALAAAGVGPVGTGSAPATDTPGLVKSAGTANAGPEGEEFEGGEGGDEPRRRRRRGGRNRN
RREREGAEGVEGVEGETAFAAEGEGADKAAIVAVAVAENAETTAPVIVTQAPAEPAVAAA
EPAVQPAPQPAEAKPEQAPAVAQAADDVIVTPVTPPVTPPVFAPVAAETAAPAQAAAPAV
EPAEAEIVEAPAAEPLPPVVETAAHAPTIIPAPVEAAPVVAEVPVAPPAETKVEAPAVAE
VREPAPVPAVAEAKAKAEAEAVAEAAVPAPAPAPVPMQAAAPAPAADLDALLASAGLTMA
STDPAKLRAAQEAAAQEAPPAPVRRQRKPAPVVPDEPLVQVSTRQ
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaacgccacgcagcaggaagagctgcgcgtggcgattgtcgat
ggtcagaaactgatcgatatcgacatcgaaaccgccggacgcgaacagcgcaagtccaat
atctacaaaggcgtcatcacccgcatcgagccgtcgctggaagcctgcttcgtcagttac
ggcgaagaccgccacggtttcctcccgtttaaagaagttgcccgcagttatttccgcgaa
ggcgtcgacgtgcgcaatgccaccgtcaaggaagcgctgcgcgaaggccaggaaatcatg
gtccaggtcgaaaaggaagagcgcggcaacaagggcgccgccctgacctcgttcatttcg
ctggccggccgttacctggtattgatgccaaacaatccgcgcggcggcggcgtgtcgcgc
cgggtcgagggcgaggaacgccaggaactgcgcgagaccatggacaagctggacttgccg
caaggcatgtccgtgatcgcccgcaccgccggcatcggccgcacggtcgaggaactgcag
tgggacttgaattacctgatgcaactgtggcgcgcgatcgaaggcgcgtccaaggccgcc
tccggcgccttcctgatctaccaggaaagctcgctcgtcatccgcgccatccgcgactat
ttccagcctgacatcggcgagatcctgatcgacaccgacgagatctacgaacaggcgcac
cagttcatgagccacgtgatgcccgacatggtgcatcgcgtcaagcgctacagcgacgac
gtgccgctgttctcgcgcttccagatcgaacatcagatcgagacggcctacagccgcacc
gtgccgctgccatccggtggcgccatcgtcatcgaccacaccgaagcgctggtttccgtc
gacgtcaactcggcccgcgccacgcgcggctcggacatcgagacgaccgccttccacacc
aactgcgaagcggccgaggaagtggcccgccagctgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaagtggccaagaaccagcgcgaggtggaacagcgc
ctgaaggacgcgctgcaccatgaccgtgcgcgtgtgcagatgggcaagatttcccgcttc
ggcctgatggaactgtcgcgccagcgcctgcgcccttccctgtcggaaggctcgcacgtg
acgtgcccgcgctgctccggcaccggccacatccgcgataccgaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaacagcgccgccatccacgtgcag
gtaccggtcgacgtggccgccttcctgctgaacgaaaagcgtggcgaggtgctgaagatc
gaaaaccgccaccgcatcaccgtgatcctggtgccgaacaagcacctggacacgccgcat
tacaagctggaacgcatcaagcacgacgatccgcgcctggaagacacggccgccagctac
acgatggccgagcaggccgagaccgacatggccttcgccaagcgccagaaggaagaagcc
aagccgcgccaggaagccgtcgtcaagacgatcaccccgagccagccggccccgatggtg
gaccgcaagccggccgagccggtcgcgccggtcgcgccgccgccggctccgctcgcggcc
ccgccggccgagcagggcttctttgccaagctggtgtcgttctttaccggcaagcagccg
gaaccggtggcaccgccgaccccggccatcgttgccaagccggtcgccccaagcgccgat
cgtaccgacaagaacgcccgcggcccgcgtgcccgtggccgtaacggcaagggtccgcgc
gacgagcgcgaaccgggcagccgcgaggaaggcgtgaagccggccgccgccgagggccgt
ccagcccgtccgccgcgcccgccgcgcgagccgcgtgagccacgcgaagtgcgcgagccg
cgcgaggcagtcgagggccaggccgcgcccgccgcccgtgcggaacggccggagcgcgcc
gagcgtccggaacgtgccgagcgtcccgagcgcgcgccgcggccaccgcgcgagccacgt
gaagcgcgcgagccgcgtgaaccgaaagcccagccggccgaggcgaaagccgaggaactg
gcgctggcagcggccggtgtcggcccggtcggtaccggcagcgccccggccaccgatacg
ccgggcctggtgaagtcggccggtaccgccaacgcgggtccggaaggcgaagagttcgag
ggtggcgaaggcggcgacgagccgcgccgccgccgccgtcgtggcggccgcaatcgcaac
cgccgcgagcgcgaaggcgccgagggcgtcgagggtgtcgaaggcgaaaccgcctttgcc
gccgagggcgaaggcgccgacaaggcggccatcgtggccgtggccgtggccgagaacgcc
gagacgaccgcgcccgtcatcgtgacgcaagcgccggccgaaccggctgtcgccgcggcc
gagcctgccgtacagccggccccgcagcctgccgaagccaagcctgagcaggcgccagcc
gtggcgcaggccgctgatgacgtcatcgtgacgccggttacgccgcccgttacgccgccg
gtgttcgcgcctgtcgccgccgagacggccgcaccagcccaggctgctgccccggcagtc
gagccggccgaagcggaaatcgtcgaggcaccggccgccgagccgctgccgccagtggtc
gagacggcggcgcacgcgccgaccatcatcccggcgccggtcgaggccgcgcccgtcgtg
gccgaggtaccggtcgcgccgccagccgaaaccaaggtcgaggcaccggcagtggccgaa
gtgcgggaacctgcgccggtacccgccgtggcggaggccaaggccaaggccgaggccgag
gccgtggccgaggccgcagtgccggcacctgcgccagcaccggtcccgatgcaggcagcc
gcgccagcacccgcagccgacctggacgccctgctggcctcggccggcctgacgatggca
tcgaccgacccggccaagctgcgcgccgcgcaggaagcggccgcccaggaagcgccaccg
gcaccggtacggcgccagcgcaagccggccccggtcgttccggacgagccgctggtgcaa
gtgtcgacccggcaatga
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