Pseudoduganella armeniaca: C9I28_03925
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Entry
C9I28_03925 CDS
T05378
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
masz
Pseudoduganella armeniaca
Pathway
masz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
masz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C9I28_03925 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
masz03019
]
C9I28_03925 (recQ)
03400 DNA repair and recombination proteins [BR:
masz03400
]
C9I28_03925 (recQ)
Enzymes [BR:
masz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C9I28_03925 (recQ)
Messenger RNA biogenesis [BR:
masz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C9I28_03925 (recQ)
DNA repair and recombination proteins [BR:
masz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C9I28_03925 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AVR94957
UniProt:
A0A2R4C5Q0
LinkDB
All DBs
Position
complement(883731..885551)
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AA seq
606 aa
AA seq
DB search
MDQLDISQRALHVLETVFGYPAFRGHQAEIVEHVANGGDALVLMPTGGGKSLCYQIPALL
RDGVGVVVSPLIALMQDQVDALEEVGVRAAFLNSTQTWEEASRIERMVRTGQLDLLYVAP
ERLMTQRCFDLLQDSKIALFAIDEAHCVSQWGHDFRPEYIKLSVLHEQFPNVPRIALTAT
ADPQTRAEIAHRLDLTDAAQFVSSFDRPNIRYQIVEKTTGRKQLLDFITTEHPTDAGIVY
CLSRKKVEETAEFLNENGIRALPYHAGMEHAKRAANQARFLREESLVMVATIAFGMGIDK
PDVRFVAHLDLPKSIEGYYQETGRAGRDGLPASAWMSYGLQDVVLQRRMIDESEADENFK
RVLGMKLDAMLGLCETLSCRRVRLLDYFGEPSGPCGNCDTCLLPPVSFDGTVPVQKLLST
IYRVDQRFAATHVIEVLRGVETERIKTWHHDALSVFGIGADRSEQEWRAILRQVIALGLV
TVDHDQYSSLKLTDAARPVLKGGQKVQLRQYQKPAKPKRTSAPKGYAETFLEPAEQAIFD
RLRSWRMGMAREHNVAAFVIFADATLREIAKVKPTTLGELRGVSGVGEKKLASYGGDIVG
IISEMV
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggatcaactggatatcagtcagcgcgcactgcatgtgctggaaacggttttcggctac
cccgcgtttcgcgggcaccaggccgagatcgtcgaacatgtcgccaacggtggcgacgcg
ctggtgctgatgcccaccggcggcggcaagtcgctgtgctaccagattccggcgctgctg
cgcgatggggtcggcgttgtcgtctcgccgctgatcgcgctgatgcaggaccaggtcgac
gcgctcgaggaagtgggcgtgcgcgccgccttcctgaactccacgcaaacgtgggaagaa
gcctcgcgcatcgagcgcatggtgcgcaccggccagctcgatctgctgtacgtggcgccc
gagcgcctgatgacgcagcgctgcttcgacctgctgcaggattcgaagatcgcgctgttc
gccatcgacgaggcgcactgcgtgtcgcaatggggccacgacttccgccccgaatacatc
aagctctcggtgctgcacgagcagttcccgaacgtgccgcgcatcgcgctgacggccacc
gccgacccgcagacgcgcgccgagatcgcccaccgcctcgacctgacggatgcggcgcag
ttcgtgtcgtcgttcgaccgcccgaatatccgctaccagatcgtcgagaagaccacgggg
cgcaagcagctgctggacttcatcaccaccgagcacccgaccgacgccggcatcgtctac
tgcctgtcgcgcaagaaggtcgaggaaacggccgaattcctgaacgagaacggcatccgc
gccctgccctaccacgccggcatggagcatgcgaaacgcgcggccaaccaggcccgcttc
ctgcgcgaggaaagcctggtgatggtggcgacgatcgcgttcggcatgggcatcgacaag
ccggacgtgcgcttcgtcgcccacctggacctgccgaaaagtatcgagggctattaccag
gaaaccggccgcgccggccgtgacggcctgccggccagcgcctggatgtcgtatggcctg
caggacgtggtgctgcagcgccggatgatcgacgaatccgaggcggacgagaacttcaag
cgcgtgctgggcatgaagctcgacgcgatgctgggcctgtgcgaaacgctgtcgtgccgg
cgcgtgcgcctgctcgattacttcggcgagccgtccggcccatgcggcaattgcgacacc
tgcctgctgccgccggtgtcgttcgacggcacggtgccggtgcagaaactgctgtcgacg
atctaccgcgtcgaccagcgcttcgccgccacccacgtgatcgaggtgctgcgcggcgtc
gagacggagcgcatcaagacctggcaccatgacgccttgtccgtgttcggcatcggcgcc
gaccgcagcgagcaggaatggcgcgccatcctgcgccaggtcatcgcgcttggcctcgtc
acggtcgaccacgaccaatacagctcgctgaagctgacggatgcggcgcgccccgtgctg
aagggcggccagaaggtgcaactgcgccagtaccagaagccggccaagccgaagcgcacg
tcggcgccgaaaggctatgccgagacgttcctggagccggccgaacaggcgatcttcgac
cgcctgcgctcgtggcgcatgggcatggcgcgcgaacacaacgtcgcggcgttcgtcatc
ttcgccgatgccaccctgcgcgagatcgccaaggtcaagccgaccaccctgggcgaactg
cgcggcgtatccggcgtgggcgagaagaagctggcttcctatggcggcgatatcgtcggc
atcatttccgagatggtgtaa
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