Pseudoduganella armeniaca: C9I28_04560
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Entry
C9I28_04560 CDS
T05378
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
masz
Pseudoduganella armeniaca
Brite
KEGG Orthology (KO) [BR:
masz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
masz03016
]
C9I28_04560 (thpR)
Enzymes [BR:
masz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
C9I28_04560 (thpR)
Transfer RNA biogenesis [BR:
masz03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
C9I28_04560 (thpR)
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
AVR95070
UniProt:
A0A2R4C679
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All DBs
Position
complement(1027611..1028138)
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AA seq
175 aa
AA seq
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MIANHPEATTNGPTRKLFYALWPDDAERAALAALQAGVRGRLIPPAKLHITLAFLGHLPA
AAVPTLLQILAALPLPPLALSIDCYGYFAKPRIAWAGMTQPPAALLDLQAELARRLEVAG
FSTATHGSFKPHVTLAREAQEAPSGTFAPVPWHGARAVLVESLPGGEYVVVETHR
NT seq
528 nt
NT seq
+upstream
nt +downstream
nt
atgatagcaaatcatccggaagccacgacaaacggccccacccgcaagctgttctacgcg
ctgtggccggacgatgccgagcgcgccgccctggccgcgttgcaggcaggcgtaaggggc
cgcctcatcccgcctgccaagctgcacatcaccctggccttcctgggccacctgccggcc
gctgccgtgccgacgctgctgcagatcctggccgcgctgccgctgccgccgctggcactg
tcgatcgactgctacggctatttcgccaagccccgcatcgcctgggccggcatgacgcag
ccgcccgccgcgctgctggacttgcaggccgagctggcgcggcggctggaggtggccggc
ttctccaccgccacccatggcagcttcaagccgcacgtcacgctggcgcgcgaggcgcag
gaggcgccgtccggcacgttcgcaccggtgccgtggcacggggcgcgggcggtgctggtg
gagtcgttgccgggtggggagtatgtggtcgtcgagacccacaggtga
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