Pseudoduganella armeniaca: C9I28_05965
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Entry
C9I28_05965 CDS
T05378
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
masz
Pseudoduganella armeniaca
Brite
KEGG Orthology (KO) [BR:
masz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
masz03016
]
C9I28_05965
Enzymes [BR:
masz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C9I28_05965
Transfer RNA biogenesis [BR:
masz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C9I28_05965
Prokaryotic type
tRNA splicing ligases
C9I28_05965
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AVR95324
UniProt:
A0A2R4C6T7
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All DBs
Position
1358108..1359352
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AA seq
414 aa
AA seq
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MNKQDLRDYDTMDVPGGRPVKMWTHGVPVEAAAKQQLANTARMPFIYKHIAVMPDVHLGK
GSTIGSVIPTLGAVIPAAVGVDIGCGMMAAKTTLTASDLPDNLGPLRSAIEKAIPHGLSP
RTRGFKGRDEGSWQSPPSAVDAAWMQLKDDFDVICAKTPKLRHTNNYKHLGTLGTGNHFI
EVCLDEDNAVWLMLHSGSRGVGNAIGTHFIELAQQDMRTHIANLPDRDLAYLEEGTQHYD
DYVEAVDWAQRFARMNREVMMQNLIGAVRSVIRKPFETHVEAVNCHHNYVQKERHFGQDV
LVTRKGAVSARKGELGIIPGSMGARSYIVRGKGNEDSFTSCSHGAGRTMSRSEAKRRFTR
EDQVKATAGVECRKDDGVVDEIPMAYKDIDAVMHAQRDLVEVVHTLKQVVCVKG
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgaataaacaggatttacgcgattacgacacgatggacgtgcctgggggccggccggtc
aagatgtggacgcacggcgtgccggtcgaggcggcagcgaagcagcagctggccaatacg
gcgcgcatgccctttatttacaagcacatcgccgtcatgcccgacgtccacctgggcaag
ggctcgaccatcggcagcgtgatcccgacgctgggcgccgtcattccggccgccgtcggg
gtggacatcggctgcggcatgatggccgccaagacgacgctgacggccagcgacctgccc
gacaatctcggcccgctgcgcagcgccatcgaaaaagcgattccccatgggctgtcgccc
aggacgcgcggcttcaaggggcgcgacgaaggctcctggcagagtccgccctcggcggtg
gacgccgcctggatgcaactgaaggacgacttcgacgtcatctgcgccaagacgcccaag
ctgcggcacacgaacaactacaagcacctcggcacgctcggcacgggcaaccacttcatc
gaagtctgcctggacgaggacaacgcggtctggctgatgctgcattcgggttcgcgtggc
gtcggcaacgccatcggcacccacttcatcgaactggcgcagcaggacatgcgcacccac
atcgccaacctgcccgaccgcgacctggcctacctggaggaaggcacacagcactacgac
gactacgtggaagcggtcgactgggcccagcgtttcgcccggatgaaccgcgaggtcatg
atgcagaacctgatcggcgcggtgcgcagcgtgatccgcaagccgttcgagacccacgtg
gaggcggtgaactgccaccataattacgtccagaaggagcgccacttcggccaggacgtg
ctggtcacgcgcaagggcgccgtctccgccaggaagggagagctgggcatcatccccggc
tcgatgggcgcgcgcagctatatcgtgcgcggcaagggcaacgaggacagtttcaccagt
tgcagccacggggcagggcgcacgatgagccgcagcgaggccaaacggcgttttacgcgc
gaggaccaggtgaaggccacggccggcgtggagtgccgcaaggacgacggcgtggtggac
gagatcccgatggcctacaaggacatcgacgcggtgatgcacgcgcagcgcgacctggtc
gaggtggtgcatacgctcaagcaggtcgtctgcgtcaagggctga
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