Pseudoduganella armeniaca: C9I28_11255
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Entry
C9I28_11255 CDS
T05378
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
masz
Pseudoduganella armeniaca
Pathway
masz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
masz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C9I28_11255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
masz03021
]
C9I28_11255
Transcription machinery [BR:
masz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C9I28_11255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Dpoe2NT
Motif
Other DBs
NCBI-ProteinID:
AVR96221
UniProt:
A0A2R4C9F9
LinkDB
All DBs
Position
2567382..2569844
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AA seq
820 aa
AA seq
DB search
MTTKTPKTLTLSAKKPRTEAAPLAVPKTTLSYVIDNAQEAAGKVTVVKKTTRARLVAVPG
AAEAAPVAAVETQAAAVADVASAAVEAAPKAPVVRVRKAKLDKSAAAGAAGDPALPPTAP
AAVSQVTDAATLASIDTSGYLLPSVKVPGRRGRKPSEFTPENDEVAALNAVERAELKAAS
KARERKAKGLDALGSEAGMSQEDLEKRRQQFKNLINMGKERGFLTYAEINDQLPENIVDP
EAIEGIIATFNDMGIAVYERAPDAESLLLSDSVATAASDDEVEAAAATALSTVDSDFGRT
TDPVRMYMREMGAVALLTREGEIEIAKRIEEGLRDMIQAISACPTTIGEIVTLAEKIESD
EMKVDDVVDGFVDPEETSAPVAPARAVAASDDDEEEELEEEEEVDGDANGGAAGFSTEQL
AQLKSDALERFAVISAQYDKMRKAGYGSAAYQKAQGIISAELLSIRFTAKVVEKLCDTLR
GQMEQVRSIERAVLELCVNRCGMPRAHFIKVFPGNECNLDWVDGEVNAGHPYSIVLGRNV
PAIKELQNKMIDLQERVALPLADLRKINKQMAAGEKRARHAKREMTVANLRLVISIAKKY
INRGLQFLDLIQEGNIGLLKAVDKFEYRRGYKFSTYATWWIRQAITRSIADMARTIRVPV
HMIETINKMNRISRQIMQETGSEPDMATLAVKMEMPESKVREIMKIAKEPISMETPMGED
GDSQLGDFIEDNTTLAPLDAALHASMRNVIKEVLDSLTPREAKVLRMRYGVEMSNDHTLE
EVGKQFDVTRERIRQIEAKAMSKLRQPSRSDKLKTFLTQN
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgaaaacgccgaaaaccttaacgctgtccgccaaaaaaccgcgcaccgaagcg
gctccgctggctgtccctaagacgaccttatcttatgtgatcgacaatgcgcaagaggct
gccggcaaagtgaccgtcgtgaagaaaaccacccgtgcccgcctcgtggccgtgccgggc
gccgccgaggctgcgcccgtggccgccgtcgagacgcaggctgccgccgtggccgacgtg
gcgtcggccgccgtcgaggccgcgccgaaggcaccggtcgtgcgcgtgcgcaaggccaag
ctggacaaatctgccgccgctggcgcggcgggcgacccggcgttgccgccgaccgcgccg
gctgccgtcagccaggtgaccgatgccgccacgctggcctcgatcgacacttccggctac
ctgctgccatcggtgaaagtgccgggccgccgcggccgcaagccgagcgagttcaccccc
gagaacgatgaagtggcggcgctcaacgccgtcgagcgcgccgaactgaaggcggcctcc
aaggcgcgcgagcgcaaggccaagggcctggacgcgctgggcagcgaagccggcatgtcg
caggaagacctggaaaagcgccgccagcagttcaagaacctgatcaacatgggcaaggag
cgcggcttcctgacctatgccgagatcaacgaccagctgccggaaaacatcgtcgatccg
gaagcgatcgaaggcatcatcgccacgttcaacgacatgggcatcgccgtctacgagcgc
gcgcccgacgcggaaagcctgctgctgtccgacagcgtggccacggccgccagcgacgac
gaagtggaagcggccgccgcgacggcgctgtcgaccgtcgattccgacttcggccgcacc
accgacccggtgcgcatgtacatgcgcgagatgggcgccgtggcgctcttgacgcgtgaa
ggcgagatcgagatcgccaagcgcatcgaggaaggcctgcgcgacatgatccaggccatc
tccgcctgcccgaccacgatcggcgagatcgtcacgctggccgagaagatcgaaagcgac
gagatgaaggtggacgacgtggtcgacggtttcgtcgatccggaagagacctcggcgccg
gtggcgccggcacgcgccgttgccgccagcgacgacgatgaggaagaagagctggaagag
gaagaggaagtggacggcgacgccaatggcggcgcggccggcttctcgaccgaacagctg
gcgcagctcaagtccgacgcgctggagcgcttcgccgtcatctcggcgcagtacgacaag
atgcgcaaggccggctacggcagcgccgcctaccagaaggcgcagggcatcatctcggcc
gagctgctgtcgatccgcttcaccgccaaggtggtcgagaagctgtgcgacacgctgcgc
ggccagatggaacaggtgcgttcgatcgagcgcgccgtgctggaactgtgcgtgaaccgc
tgcggcatgccgcgcgcccacttcatcaaggtcttcccgggcaacgagtgcaacctggac
tgggtcgacggcgaagtgaacgcgggccacccgtacagcatcgtcctgggccgtaacgtc
ccggccatcaaggaactgcagaacaagatgatcgacctgcaggagcgcgtggcgctgccg
ctggccgacctgcgcaagatcaacaagcagatggccgccggcgagaagcgcgcccgtcac
gccaagcgcgaaatgacggtggccaacctgcgcctggtgatctcgatcgcgaagaagtac
atcaaccgcggcctgcagttcctcgacctgatccaggaaggcaatatcggcctgttgaag
gcggtggacaagttcgaataccgccgcggctataaattctccacgtacgccacgtggtgg
attcgtcaggccatcacgcgctcgatcgccgacatggcgcgcacgatccgggtgccggtg
cacatgatcgagacgatcaacaagatgaaccgcatcagccgccagatcatgcaggagacg
ggcagcgagccggacatggcgaccctggccgtcaagatggagatgccggaatcgaaggtg
cgcgagatcatgaagatcgccaaggagccgatttcgatggaaacgccgatgggcgaggac
ggcgattcgcagctgggcgacttcatcgaggacaacaccaccctggcaccgctggacgcc
gcgctgcatgcctcgatgcgcaacgtcatcaaggaagtgctggactcgctgacgccgcgc
gaagcgaaggtgctgcgcatgcgctacggcgtcgagatgtcgaacgaccacacgctggaa
gaagtgggcaagcagttcgacgtcacgcgcgaacggatccgccagatcgaagcgaaggcg
atgagcaagctgcgccagccttcgcgttcggacaagctgaagacgttcctgactcaaaat
taa
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