Pseudoduganella armeniaca: C9I28_12280
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Entry
C9I28_12280 CDS
T05378
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
masz
Pseudoduganella armeniaca
Pathway
masz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
masz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
C9I28_12280
09124 Replication and repair
03420 Nucleotide excision repair
C9I28_12280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
masz03021
]
C9I28_12280
03036 Chromosome and associated proteins [BR:
masz03036
]
C9I28_12280
03400 DNA repair and recombination proteins [BR:
masz03400
]
C9I28_12280
Enzymes [BR:
masz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
C9I28_12280
Transcription machinery [BR:
masz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
C9I28_12280
Chromosome and associated proteins [BR:
masz03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
C9I28_12280
DNA repair and recombination proteins [BR:
masz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
C9I28_12280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AVR96392
UniProt:
A0A2R4CA12
LinkDB
All DBs
Position
complement(2804443..2806734)
Genome browser
AA seq
763 aa
AA seq
DB search
MAGVTDPGPRYTVAVRALCEFTAKAGDLDLRFTPSPTAQEGIAGHAVVGARRDETYEREI
ALSGQWGPLHVRGRADGYDPRANQLEEVKTYRGDLARMPANHRALHWAQLKVYGHLLCQA
RALASVRLALVYFDIGSQKETVLAEQHDAAALRAVFEAQCAAFVDWAEQELAHRTARDAQ
LAALAFPHAAFRPGQRELAEAMFKASSRACALLAQAPTGIGKSIGSLFPLLKAAPQHGLD
KIFFLAAKTSGRQMALDAVTRLREAAPLLPLRTLELTAKSRACEHPDQACHGEACPLARG
FYDRLPAARAAALQLPLLDRASVRAAALAHDVCPYYLQSELARWADVIVGDYNYYFDFSA
LLHSLTVLNDWRVAVLVDEAHNMVSRARAMYSAELEHGTLRVLRKTAPAALAKPLDRVHR
QWLALEKDQDEDYRALEALPEKFMGALQTATTAIGDYLAENPAWFDADVLDFYFHGLHFA
RLAESFGEHSLFDVTLTTSRAGKRGSTLCLRNIVPAPFLQPRFAAARSVALFSATLSPWN
YYADTLGMPADTAWVDVASPFAADQLAVHVASHISTRWQHRDRSLAPIAALMGAQYERQP
GNYLAFFSSFDYMEKAADLFEARHPAVPVWRQARGMDEDARDAFLARFTADGQGIGFAVL
GGAFGEGIDLPGARLIGAFVATLGLPQLNPVNEGIRRRMDAIFGAGYDYTYLYPGLQKVV
QAAGRVIRTSTDRGTVHLIDDRFGRPEIQALLPAWWRIGPAVS
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcgtgaccgacccggggccgcgctacaccgtggccgtgcgcgcactgtgcgag
ttcacggccaaggcgggcgatctcgatctgcgcttcacgccctcgccgacggcgcaggaa
ggcatcgccggccatgccgtcgtcggcgcgcggcgcgacgagacttatgagcgcgagatc
gccttgtccggccagtggggcccgctgcacgtgcgcggccgcgccgacggctacgatccg
cgcgccaaccagctggaggaagtcaagacctaccgcggcgacctggcgcgcatgccggcc
aaccaccgcgccctgcactgggcccagctgaaggtgtatggccacctgctgtgccaggcg
cgcgccctggcaagcgtgcgcctggcgctggtctacttcgacatcggcagccagaaggag
acggtgctggccgagcagcatgacgccgccgcgctgcgcgccgtgttcgaggcacagtgc
gccgccttcgtcgattgggccgagcaggagctggcgcaccgcacggcgcgcgacgcgcaa
ctggcggccctggccttcccccatgccgcgttccggcccggccagcgcgaactggccgag
gccatgttcaaggccagcagccgtgcgtgcgcgctgctggcgcaggcgcccaccggcatc
ggcaagagcatcggcagcctgttcccgctgctgaaggccgcgccccagcacgggctggac
aagatcttcttcctggccgcgaagacctccggccggcagatggcgctggacgcggtcacg
cgcctgcgcgaggccgcgccgctgctgccgctgcgcacgctggagctgaccgccaagagc
cgcgcctgcgagcatccggaccaggcatgccacggcgaagcctgcccgctggcgcgcggc
ttctacgatcgcctgccggcggcgcgcgccgcggcgctgcaactgccgctgctggaccgg
gcctcggtgcgcgcggcggcgctggcgcacgatgtctgcccctactacctgcaaagcgaa
ctggcacgctgggccgatgtgatcgtgggcgactacaactattatttcgacttctccgcc
ctgctgcactccctgacggtgttgaacgactggcgcgtggccgtgctggtggacgaagcg
cacaatatggtgtcgcgcgcccgcgccatgtactcggccgaactggaacacggcaccttg
cgcgtgctgcgcaagacggcgccggcggcgctggccaagccgctcgaccgggtgcaccgc
cagtggctggcgctggagaaggatcaggacgaggactaccgggcactggaggcgctgccg
gaaaaattcatgggtgccttgcagacggcgacgacggcgatcggcgactacctcgcggaa
aacccggcctggttcgatgccgacgtgctggatttctatttccatggcctgcatttcgcc
cggctggcggaaagcttcggcgagcactcgctgttcgacgtgaccttgacgacctcgcgc
gccggcaagcgcggctccacgctgtgcctgcgcaatatcgtgccggcgccgttcctgcag
ccgcgctttgccgcggcccgctccgtggcgttgttctcggccacgttaagcccctggaac
tactacgccgacaccttgggcatgccggccgatactgcgtgggtggacgtcgcctcgccg
ttcgccgccgaccagctggcggtgcacgtggccagccacatctcgacgcgctggcagcac
cgcgaccgctcgctcgcgcccatcgcggcgctgatgggcgcgcagtacgaacgccagccc
ggcaactacctggccttcttcagcagcttcgactacatggaaaaggcggccgacctgttc
gaggcgcgccatcctgccgtgccggtgtggcgccaggcgcgcggcatggacgaagacgcg
cgcgacgccttcctggcccgcttcacggccgacggccagggcatcggcttcgccgtgctg
ggcggcgcgttcggcgaaggcatcgacctgccgggcgcgcggctgatcggcgccttcgtc
gccacgctgggcctgccgcagctgaaccccgtcaacgagggtatccgccggcgcatggac
gcgatcttcggcgccggctacgactacacctacctgtatccgggcctgcagaaggtggtg
caggcggcgggccgggtgatccgtaccagcaccgaccgcggcaccgtgcacctgatcgac
gaccgcttcggccggccggagatccaggcgctgctgccggcgtggtggcgcatcggcccc
gccgtcagctga
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