Pseudoduganella armeniaca: C9I28_15115
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Entry
C9I28_15115 CDS
T05378
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
masz
Pseudoduganella armeniaca
Pathway
masz03030
DNA replication
masz03430
Mismatch repair
masz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
masz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C9I28_15115 (holB)
03430 Mismatch repair
C9I28_15115 (holB)
03440 Homologous recombination
C9I28_15115 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
masz03032
]
C9I28_15115 (holB)
03400 DNA repair and recombination proteins [BR:
masz03400
]
C9I28_15115 (holB)
Enzymes [BR:
masz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C9I28_15115 (holB)
DNA replication proteins [BR:
masz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C9I28_15115 (holB)
DNA repair and recombination proteins [BR:
masz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C9I28_15115 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
AAA_16
DNApol3-delta_C
HolB_lid
Motif
Other DBs
NCBI-ProteinID:
AVR99227
UniProt:
A0A2R4CHU2
LinkDB
All DBs
Position
3475489..3476508
Genome browser
AA seq
339 aa
AA seq
DB search
MQTGVYPWQEGAWGQLQLLRQRLPHAILFHGAAGIGKADFIEHFAQALLCENVRADGHAC
GACASCGWFVQQSHPDYRRIRPEAFEDEPGEAEEGEDKKSKTKTPSKEIKIEQVRALADF
MNISTHRQGLRVVVLYPAEALNMPASNALLKTLEEPPPGTVFLLASNSLDRLLPTILSRC
RKFALPLPAHTEALAWLQTQGVADADSWLREQGGAPLAALAQSEAGNREEIDTLLQYLAH
PAVEGALRTADKLQKVPLTSLVAWQQRWLYDLFSCKLTGNIRYYPRYGRELKALAEKVHV
SRLLAAIKGTAERRATSDHPLSPKLFIEDMLLDYTACCA
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccggcgtctatccatggcaagagggcgcgtggggccagttgcagctgttgcgc
cagcgcctgccgcacgcgatcctgttccacggcgcggccggcatcggcaaggccgacttc
atcgagcactttgcccaggccctgctgtgcgagaacgtgcgtgccgacggccacgcctgc
ggcgcgtgcgcctcgtgcggctggttcgtccagcagagccacccggactaccggcgtatc
cgtccggaagcgttcgaggacgagccgggcgaggcggaagagggcgaagacaagaagagc
aagaccaagacgccgtccaaggaaatcaagatcgagcaggtgcgcgcgctggccgacttc
atgaacatctcgacgcatcggcagggcctgcgcgtggtcgtgctgtacccggccgaggcg
ctcaacatgccggcgtcgaacgcgctcctgaagacactggaagagccgccgccgggcact
gtgttcctgctggcgtcgaacagcctggaccgcctgctgccgaccatcctgtcgcgctgc
cgcaagttcgcgctgccgctgcccgcgcacacggaagcgctggcatggctgcagacccag
ggcgtggcggacgcggacagctggctgcgcgagcagggcggcgcgccgctggcggcgctg
gcgcagtcggaggccggcaaccgcgaggaaatcgacaccttgctgcagtacctggcccat
ccggccgtcgaaggcgcgctgcgtacggccgacaagctgcagaaggtgccgctgacgtcg
ctggtggcatggcagcagcgctggctgtacgacctgttttcctgcaagctgaccggcaac
atccggtattatccccgttacggccgcgagctgaaggccctggccgagaaggtgcacgtg
agccggctgctggcggcgatcaagggcaccgccgagcggcgcgccacctccgaccacccg
ctctcgcccaagctgttcatcgaggatatgctgctggactatactgcctgctgtgcatga
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