Pseudoduganella armeniaca: C9I28_18280
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Entry
C9I28_18280 CDS
T05378
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
masz
Pseudoduganella armeniaca
Pathway
masz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
masz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
C9I28_18280 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
masz03400
]
C9I28_18280 (recB)
Enzymes [BR:
masz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
C9I28_18280 (recB)
DNA repair and recombination proteins [BR:
masz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C9I28_18280 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
AVR99286
UniProt:
A0A2R4CI76
LinkDB
All DBs
Position
complement(4194948..4198628)
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AA seq
1226 aa
AA seq
DB search
MQGTPLLDALTFPLHGSRLIEASAGTGKTWTIAALYVRLVLGHGGADAFVRPLLPADILV
MTFTRAATRELSNRVRERLVEAAAYFRGQAEAGDPYLDALLDSYPEHSARQQAAHRLMLA
AETMDEAAIFTIDSWCQRMLREHAFDSGNLFDEELVSDEAALFEDAAHDYWRQQVYPLRE
PALGALLACWPDVGRLKASLRDLVKRADGSWHCDGDGQPLPLGALIGAALHELQQRLAAL
KAGWIERIERMEIWLEEKKDAGLLNGRKIQMKWLAGWFGSLRVWVADPARVDPDMAAAGW
HRLSPEGIAEAYEGSDVPAEFAALRQLKDDLAGIEPLAHRLYRHAAAVIAARMEELKRRN
RQFGFADMLLRLQNALEGANGAALRERITQQYPVALVDEFQDTAPSQYRIFDLLYRVADN
DPNLGLFLIGDPKQSIYGFRGADIHSYLAARRATAGRHYQLGTNYRSTREVVEAVNRIFL
HAERLAGDKGFDKGAFRFRSGAVNPLPFDPVDAKGRPERLVGVDGQLQALTVACAEAPDL
RADAYRDFFAHHCAEHIVELLNHPGTGFDGPEGFRRLQPADIAILVRDRKEAKAIRDALR
RRCVPSVYLSDKDSVLDSDEARDVLRWLTALANPLEGGLARAAFATRTANLPLAELARFS
ADELAWEARTEQLKALHAVWQRQGVLAMLRRFIHELGLPAALLAQPGGERRLTNLLHLAE
LLQSASRQLDGEQALIRWMAEQVEGEGDNSDEQVLRLESDAELVKVVTVHKSKGLEYPLV
YLPFAVTARKVERRNRSFFEYTDGDGVRRIDMALSDDAHAAVEAARIEEELRLLYVALTR
ARHFLWLGVAALPAKAKGANVLHESALGYLLTGGAPLPADALQERWQHLRGDCAAIGIAS
AGAPERVTLLARVEHKPPLVEAAPFDARFERDWSVGSFTSLTRGVQVEAAVPVPRDALEA
TLLEGEDGDPAGNATAVQEAPWHRFPRGSVPGNFLHEQLEWLAQEGFDSIHDAGFDARIG
RRIERAGWGHRLEDTIAWLRELVVTPLPPLGAALQDVGMLLPEMEFWFPSERLATGALDA
LCRRHLLDGMARPPLPQRALHGMLKGFSDLVFEHQGRYWVLDYKSNALGARDSAYHAAAL
AHGMAEHRYDVQGAIYLLALHRLLRSRLGAAYDPALHLGGAVFWFLRGVGNAATRGCHLI
GPDEELLDGLDALLHADAPEPMMDEE
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggcacgccgctgctggacgcgctgacgttcccgctgcacggctcgcgcctgatc
gaggccagcgccggcaccggcaagacctggaccatcgccgcgttgtacgtgcggctggtg
ctgggccatggcggcgccgacgcctttgtccgtccgctgctgccggccgatatcctggtg
atgacgttcacccgcgccgccacgcgcgagctgtccaaccgcgtgcgcgaacggctggtc
gaggcggccgcctacttccgcggccaggccgaggccggcgatccctacctggatgcgttg
ctcgactcgtatcccgagcacagcgcgcgccagcaggccgcgcaccgcctgatgctggcc
gccgagacgatggacgaagcggccatcttcacgatcgactcgtggtgccagcgcatgctg
cgcgagcacgcgttcgacagcggcaacctgttcgacgaggaactggtcagcgacgaggcg
gccctgttcgaggacgcggcgcacgactactggcgccagcaggtctacccgctgcgcgag
ccggcgctgggtgcgctgctggcctgctggccggacgtgggccgcctgaaggccagcctg
cgcgacctggtgaaacgggccgacggcagctggcattgcgacggcgacggccagccgctg
cccctgggcgcgctgatcggcgccgcgctgcacgagctgcagcaacggctggcggcactc
aaggccggctggatcgagcgcatcgaacggatggagatctggctggaggagaagaaggac
gccgggctcctgaacggccgcaagatccagatgaaatggctggccggctggttcggcagc
ctgcgcgtgtgggtggccgacccggcccgggtcgatccggacatggcggccgccggctgg
caccgcctgtcgccggaaggcatcgccgaagcctacgagggcagcgacgtgcccgccgaa
ttcgccgcgctgcgccagctgaaggacgacctggccggcatcgagccgctggcgcaccgg
ctgtaccgccacgccgccgccgtgatcgcggcacgcatggaggaactgaagcgccgcaat
cgccagttcggctttgccgacatgctgctgcgcctccagaatgcgctggagggcgcgaac
ggcgcggcgctgcgcgaacgcatcacgcagcagtacccggtggcgctggtggacgagttc
caggacacggcaccgagccagtaccgcatcttcgacctgctgtaccgggtcgcggacaac
gaccccaacctgggcctgttcctgatcggcgacccgaagcagtcgatctacggtttccgc
ggggcagacatccacagctacctggccgcgcgccgcgccaccgccggccgccactaccag
ctcggcaccaactaccgctccacgcgcgaggtggtggaagcggtcaaccgcatcttcctg
cacgccgagcggctggccggcgacaagggcttcgacaagggcgcgttccgcttccgctcc
ggcgccgtcaatccactgccgttcgatccggtcgatgccaagggccggccggaacggctg
gtcggcgtcgatggccagttgcaggcgctgacggtggcgtgcgcggaggcgcccgacctg
cgtgccgacgcctaccgcgattttttcgcgcaccactgcgccgagcatatcgtcgaactg
ctgaaccatccgggcacgggcttcgacggcccggagggtttccgccgcctgcaaccggcc
gacatcgccatcctggtgcgcgaccgcaaggaagccaaggcgatccgcgatgcgctgcgg
cggcggtgcgtgcccagcgtctacctgtccgacaaggattcggtgctggacagcgacgaa
gcgcgcgacgtgctgcgctggctgaccgccctggccaatccgctcgaaggcggcctggcg
cgggccgccttcgccacgcgcacggccaacctgccgctggccgagctggcgcgtttctcg
gccgacgaactggcgtgggaggcgcgcaccgagcagctgaaggccctgcacgccgtctgg
cagcgccagggcgtgctggcgatgctgcgccgcttcatccacgaactgggcctgccggcc
gcgctgctggcgcagccgggtggcgaacgccggctgaccaacctgctgcacctggccgag
ctgctgcagtcggccagccgccagctcgatggcgagcaggcgctgatccgctggatggcc
gagcaggtcgagggcgagggcgacaacagcgacgaacaggtgctgcggctggaatcggat
gcggagctggtcaaggtcgtcacggtacacaagtcgaagggcctggaatacccgctggtg
tacctgccgttcgccgtcacggcgcgcaaggtcgagcggcgcaaccgcagcttcttcgag
tacaccgatggcgacggcgtgcgccgcatcgacatggcgctgtccgacgacgcccacgcg
gcggtggaagcggcccgcatcgaggaggagctgcgcctcttgtacgtggcgctgacgcgg
gcgcgccacttcctgtggctgggcgtggcggcgctgccggccaaggccaagggcgccaac
gtgctgcacgaatcggcgctgggctacctgctgacgggcggcgcgccgctgccggcggac
gcgctgcaggaacgctggcagcacctgcgcggcgactgcgccgcgatcggcatcgccagc
gccggcgcgcccgagcgcgtcaccctgctggcacgcgtcgagcacaagccgcccctggtc
gaggcggcgccgttcgacgcccgattcgagcgcgactggtcggtcggcagcttcacctcg
ctgacgcgcggcgtgcaggtggaagcagcggtgccggtgccgcgcgacgcgctggaagcg
accctgctggaaggcgaggatggcgacccggccggcaatgccacggcggtgcaggaagcg
ccctggcaccggttcccgcgcggctccgtgcccggcaacttcctgcacgagcagctcgag
tggctggcgcaggaaggcttcgacagcatccacgacgccggcttcgacgcccgcatcggc
cgccgcatcgagcgtgccggctggggccaccggctggaagacaccatcgcctggctgcgc
gagctggtcgtcacgcccttgccgccgctgggtgcggccctgcaggacgtcggcatgctg
ctgcccgaaatggagttctggttccccagcgagcgcctggccaccggtgcgctggacgcg
ctgtgccggcgccacctgctggacggcatggcccgtccgcccttgccgcagcgcgcgctg
cacggcatgctgaagggcttctccgacctggtgttcgaacaccagggccgctattgggtg
ctggactacaaatcgaacgcgctgggcgcgcgcgacagcgcctatcatgcggcggcgctg
gcgcacggcatggccgagcaccgctacgacgtgcagggcgcgatctacctgctggcgctg
caccgcctgctgcgcagccggctgggcgcggcctacgatccggcactgcacctgggcggc
gcggtgttctggttcctgcgcggcgtcggcaacgccgccacgcgcggctgccacctgatc
gggccggatgaagaactgctcgatggcctggacgcgctgctgcacgcggacgcgccggaa
cccatgatggacgaggaatga
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