Pseudoduganella armeniaca: C9I28_18715
Help
Entry
C9I28_18715 CDS
T05378
Name
(GenBank) type IV secretion protein Rhs
Organism
masz
Pseudoduganella armeniaca
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6861
DUF6531
RHS
TEN_YD-shell
DUF4595
Gly-zipper_Omp
Motif
Other DBs
NCBI-ProteinID:
AVR97446
UniProt:
A0A2R4CCW1
LinkDB
All DBs
Position
complement(4291779..4296227)
Genome browser
AA seq
1482 aa
AA seq
DB search
MPDSPSSWTEFTRALETARRAYEQAGKQTRLDIAHRVQRWSNQVEASLADVAAASMRIDT
VRCAWAVRTALDDSQPRFVELLRQRFAGIDFTMVVHLLHEMMKQVAIYVGGGAVLGATAG
GVLGALAGGVGAIPGAAAGGQLGGMLGVEILAWMGLGMMVMDLSRTVPDLCKLFAQGFAS
AWSAGELPEDAHEKRVRLMRQATGAFAEGELLLVKAILTALVLYVSRSQVSNSILVQTLS
KSKLGPRFAEWVGQNRDKLLHHPNLQPKVASAQGAAEAGAEKAALAKAEAPKPVEQGTVK
QGEAKRQYPCVRVGMPVNPSNGSKVLLGELDLDFALPAPLPIVWQRSYSSAQRRAGWLGQ
GWSLPISDTLQVSADEVVVMDAFDREITFSLPRVGESIYSPSEQITLVRTEESTFELVDN
NGLRTRFAILYGAGTARLTGWQDANSNHIRIEYDARQLPARIEDSAGHSLALEFGQVRGD
VRLLSVTLLPSAPEQAAQTLVRYDYDERGDLRGVRNRAGDVVRQFAYHHHILVEHSQPDG
LVSRYEYDIEDPSGKVLRNWTNTGQWWQFEYLPHETVVTDQLGRVERYRFDLRGRLIAQQ
DAAGGGTTYKLDANGNLLQLKDPAGRTVRYRYDERSRVIRVERGERGTGIVYDGRFDKPA
LITDALGNTTTLRYDALGNLTSVTNALGQRTAYQYDDRGLPVKVTDARGGVKLLDYNRAG
QLISYTDCSGSTSHFSYDPEGRLVRALDPLGNASTYAYDALGRLQAVTHADGSTERYEYD
RLGRLVAHIDPAGHRTAYELDRDGKPLKRIDARGGVLEYRYDTARRIAQLINENGDVHRF
VYDELDRLAEETSFDARLTRYRYDGSGLLVGKEELGCAPRTEYTPIATTYVRDGLGQLVE
KEISRVTGIAQAQQLRLRFAYDALGRMIQAINADATVTMAYDALGQLVSEQTEASGSTSL
LRHAYDELGNRVQTILPDGRVLNNLYYGSGHLHQINLDGELITDIERDRAHRMISRTQGA
LVSQFQYDPVGRLLSQTAVAPTAGEGSAPVIARKYEYDEVGNLVSIDDQRNGVTRYSYDP
IGRILSAVQPNLIERFAFDPAHNLLDTTVASVGRVEGNRIRVYEDKRYDYDEHGNVVEKL
IGKHTRMRFEWNAAHQMVKSSVARNSSDTVQTVRYAYDPFGRRIAKKDAFGVTRFVWDGN
RLLCEQRGSHARTYVYGEDAFVPLARIESIVGGEVNSRAELIHLQTDHLGTPRELTDSDG
QVIWAAQYRAWGAKLAVVDERLTVTWTEDAASLTSVQPIRFQGQYLDNETGLHYNRFRYY
DPDVGRFVSSDPIGLVGGINSYQYAANATTWIDPSGLSGTKIVVIGEGQAAVDEAARLLR
AQGYAAESMMFPTNQWRGGILRPGMSSDLFERAVQWNKKWLNEKIANGYQVVDIGPDGRS
QPSRFYEAELEAVRESNHSKATLKKFGSGETVQEMRARVRKC
NT seq
4449 nt
NT seq
+upstream
nt +downstream
nt
atgccagattctcccagcagctggaccgaattcacgcgcgcgctcgagacggcgcggcgc
gcctacgagcaggccggcaagcagacccggctcgacattgcccaccgcgtgcaacgctgg
tcgaaccaggtcgaagcatcgctggccgacgtggccgcggccagcatgcggatcgacacg
gtgcgctgcgcctgggccgtgcgcaccgcgctggacgactcgcagccgcgctttgtcgaa
ctgctcaggcagcgcttcgccggcatcgacttcacgatggtggtgcacctgctgcacgag
atgatgaagcaggtggcgatctacgtgggcggcggcgccgtgctgggtgccaccgctggc
ggcgtgctcggggcgctggccggtggcgtgggcgccatccccggcgcggcggcgggcggt
cagctgggcggcatgctgggcgtcgagatcctggcctggatgggcctgggcatgatggtg
atggacttgagccgcacggtgcccgacctgtgcaagctgttcgcgcagggctttgccagc
gcctggagcgctggcgaactgccggaggacgcgcatgagaagcgcgtccggttgatgcgc
caggccacgggcgcgttcgcggaaggcgagctgctgttggtgaaagcgatcctgacggcg
ctggtactgtacgtgtcgcgcagccaggtgtcgaattcgatactggtgcagaccctgtcg
aagagtaagctggggccgcgctttgccgaatgggtgggccagaaccgcgacaagctgctg
caccatccgaacctgcaacccaaggttgccagtgcccagggcgccgcggaagccggtgcg
gagaaagccgcgctggcgaaggcggaagcaccgaagccggtcgaacagggcacggtcaag
cagggggaggcgaaaagacagtacccctgtgtgcgagtcggcatgcccgtcaatccgagc
aacggcagcaaggtcctgctgggtgagctggacctggactttgcgctgccggcgccgctg
ccgatcgtctggcagcgcagctacagctcggcgcagcgccgggccggctggctgggccag
gggtggtcgctgccgatcagcgacacgctgcaggtcagcgccgacgaagtcgtcgtcatg
gatgcgttcgaccgggagatcacgttctcgctgccgcgcgtgggggagtcgatctactcg
ccatcggagcagatcacgctggtgcgcacggaggaaagcacgttcgagctggtcgacaac
aacggcttgcgcacccgcttcgccatcctgtacggcgcagggactgcccgcctgacgggc
tggcaggacgccaacagcaaccatatccgcatcgagtacgacgcacgccagttgccggcc
cggatcgaggacagcgcgggccacagcctggcgctggagttcggccaggtgcggggtgac
gtgcggctgctgtccgtcaccctgctgccctccgcgccggagcaggccgcgcaaacgctg
gtgcgctacgactacgacgagcggggcgacctgcgcggcgtgcgcaaccgcgccggcgac
gtggtgcgccagttcgcctaccaccaccacatcctggtcgagcacagccagccggacggg
ctggtgtcgcgctacgaatacgatatcgaggacccgagcggcaaggtgctgcgcaactgg
accaacacgggccagtggtggcagttcgagtacctgccgcacgagacggtcgtcaccgac
cagctgggccgggtcgaacggtaccgcttcgacctgcgcggccgcctgatcgcgcaacag
gacgcggctgggggcggcacgacctacaagctcgatgccaacggcaacctgctgcagctg
aaggacccggccggccgcacggtgcgctaccgctacgacgagcgcagccgcgtgatacgt
gtcgagcggggcgagcgcggcacgggcatcgtctacgacggccgtttcgacaagccggcc
ctgatcacggatgccctgggcaatacgacgaccttgcgctacgacgcgctgggcaatctg
accagcgtgacaaatgcgctgggccagcgcacggcgtatcaatatgacgaccgcggcttg
ccggtcaaggtgacggacgcgcgcggcggtgtgaaactgctggactacaaccgcgcgggc
cagctgatcagctacacggactgctcgggcagtaccagccatttcagctacgaccctgag
ggccgactggtgcgcgcgctcgacccgctcggcaacgccagcacctacgcctacgacgcc
ctcgggcgcctccaagcggtcacccatgcggacggcagcacggagcgctacgaatacgac
cggctgggccgtctggtcgcccacatcgacccggccggccaccgcaccgcctatgagctg
gaccgcgacggcaagccgttaaaacggatcgacgcacgcggcggcgtgctggaataccgc
tacgacacggcgcgccgcatcgcccagctgatcaacgaaaacggcgacgtccaccgcttc
gtctatgacgagctggaccgcctggccgaggaaaccagttttgatgcgcgcctgacgcgc
taccgctacgacggcagcggcctgctggtcggcaaggaagaactgggctgcgcgccgcgt
accgagtacacgccgatcgccacgacctacgtgcgcgacggcctgggccagctggtcgag
aaggaaatctcgcgcgtgaccggcatcgcccaggcgcagcagttgcggttgcgctttgcc
tacgatgcgttgggccggatgatccaggcgatcaatgcggatgccaccgtcacgatggcg
tatgacgcgctgggccagctcgtgtcggagcaaaccgaggcgtcgggctcgacgtcactg
ctgcgccacgcctacgacgagctgggcaaccgcgtgcagacgatcctgccggacggacgt
gtgctgaacaacctgtactacggctcgggccacctgcaccagatcaacctggacggtgag
ttgatcaccgatatcgagcgcgatcgggcgcaccggatgatcagccgcacgcagggggca
ctggtcagccagttccagtacgatccggtggggcgcctgctgtcgcagaccgccgttgcc
ccgacggccggcgaaggctcagcgcccgtcatcgcgcgcaaatacgagtacgatgaagtc
ggcaacctggtgtcgatcgatgaccagcgcaacggggtgacgcgctacagctacgatccg
atcgggcgcatcctatcggcggtgcagccgaatctcatcgagcgatttgcgttcgacccg
gcgcacaatctgctcgataccaccgtcgcttccgtgggtcgcgtcgagggcaaccgcatc
cgcgtctacgaggacaagcgctatgactacgacgagcatggcaatgtcgtcgaaaagctg
atcggcaagcatacgcggatgaggttcgagtggaacgccgcgcatcagatggtcaagagc
agcgtggcgcggaactcttccgatactgtacagacggttcggtatgcctatgatccgttc
gggcggcggattgcgaagaaggatgcgtttggagttacgcggtttgtttgggacgggaac
cggttgctttgcgagcagcgggggagtcatgcgcggacttacgtttatggtgaggacgcg
tttgttccgctggcgcggattgaatcgatagttggaggcgaggtcaactcgcgtgctgag
ttgattcatctgcagaccgaccatttgggtactccacgtgagctgacggattcggacggt
caagttatttgggcggcgcagtatcgggcctggggagccaaactcgcggtagttgatgaa
cggttgaccgttacctggactgaagatgcagcctcgctcacatcggtccagccaatccga
ttccaaggtcagtacctcgacaacgaaactgggttgcattacaaccggtttcgttactac
gatccggacgtcggccgatttgtttcaagtgacccaattggtctcgtgggagggattaac
agttaccagtatgcagctaacgccacaacttggattgacccatcaggcctgagtggaacc
aagatcgtagtgattggagaaggccaggcagctgtagacgaggcagcccgcctgctacgg
gcacaggggtacgcggcggaaagtatgatgttcccaacgaaccaatggagaggagggata
ctcaggcctggcatgagctccgatctcttcgagcgtgctgtgcagtggaataagaagtgg
ttaaatgagaaaatcgcgaacggataccaagtcgtggatatcgggccagacggaagatcg
caaccgagcagattttacgaagctgagctcgaagctgtacgcgaatccaatcattcgaaa
gctacacttaagaaattcggttctggggaaactgttcaagaaatgcgtgcaagagttcga
aagtgttga
DBGET
integrated database retrieval system
