Pseudoduganella armeniaca: C9I28_19565
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Entry
C9I28_19565 CDS
T05378
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
masz
Pseudoduganella armeniaca
Brite
KEGG Orthology (KO) [BR:
masz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
masz03400
]
C9I28_19565
DNA repair and recombination proteins [BR:
masz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C9I28_19565
Archaeal homologous recombinant proteins
C9I28_19565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
nSTAND3
ABC_tran
RsgA_GTPase
AAA_22
AAA_15
Motif
Other DBs
NCBI-ProteinID:
AVR97590
UniProt:
A0A2R4CDP0
LinkDB
All DBs
Position
4502373..4506158
Genome browser
AA seq
1261 aa
AA seq
DB search
MKILRIGGKNLASLADEFSVDFGSEPLASSGLFAISGPTGAGKSTLLDALCLALYDRTPR
LVHARGKTPDVGEPISSDDPRTLLRRGSPEGYAEVDFVGNDGNAYRARWSVRRARTRAAG
ALQPTAMTLHTLPQLQPIGATKTEVKQEIEQRIGLNFEQFTRAVLLAQNEFATFLKSQDD
ERGVLMETLTGSTVYSELSKRAHERQKLELHKLQQLRDRLADQQPLSGEQRAETERLARE
ADAALAALDARRGVLEADLRWHEQAVRLAQGVDEARAELARRSAAVGDAAPRHAVLARYD
AVQEARPLHDEIVRLAAEAAQARAGAARCEQEAEQARLAQEAAGAAAQQLQAALAEAEAA
QVAAAPQLDQAKALDARIEAMQPAHTQARATRDAAVAVVTQAAAALSDKRNDRRKLQEAQ
QFGQAWLAEHRHWATLGQQWTRWDALFAQAGRALGQANAFAAKLEQARGGMTQQRDAETA
ARDQLETAARRATELLAQRDAAMQALAAFDGDALQQRRAALERRRAALAAGEKAWLDLAA
KTTRATALDEQGAQLRATLAQAQAQLAQAQQDHAARKAALAQAERALALAEAACGDSVEA
LRDTLEDGLPCPVCGAEQHPYHGNDKLHALLDQLRQDVAQGRAALDQLIEHGATQRALVN
ASTGQLTQVDTERTALAAALATAQQRWHAAREAIAAAGDGSPAADGTEQWLADRLADVAA
GSQALEQDEAGLRRAAAARDAAQRAYDEAMAAQGKWQAAAANAATALAQAAAQLEALQSQ
QLDAQARLDTLLDELEPAFDGIEQDGDWKESWRAHPEHFHALRQAEGRQWLTQHAAIDER
AVALAALEVELNALHEAHGKAAADEQAARAAFAAADEALQQARTQRLALWNGTPVREVEA
RLRAAGDAARARLQAQQEAAQQAAQQRTRCDEALAQGRRRIGELEEASVAATERLATWLA
GFQQARTEPDLFTPAPDVGIASLDELRALLAHPLEAIRAERQALQALEQAAAQARTVLQE
REAQCARHRETAPADPAQTLDTLRELLQALAAERHAAHEQATGYRLALAHDDERRRRASD
VLADIERQEAVERKWARLSELIGSADGKKFRNYAQQFTLDVLLGYANAHLGQLAPRYQLQ
RIDNPAQPSLGLLVRDLHMGDDMRSVHSLSGGESFLVSLALALGLASLSSNRVRVESLFI
DEGFGSLDAETLRVAMDALDNLQSMGRKVGVISHVQDMTERIATRISVLPGAGGRSTVSV
H
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcctgcgtatcggcggtaaaaacctggcttcactggcggacgaattctcggtg
gacttcggcagcgaaccgctggcgtcttccggcctgttcgccatcagcggcccgaccggc
gccggcaagagcaccttgctggacgcactgtgcctggcgctgtacgaccgcacgccgcgc
ctggtgcacgcgcgcggcaagaccccggacgtgggcgagccgatttcgtcggacgacccg
cgcacgctgctgcggcgcggctcgccggaaggctacgcggaagtggacttcgtcggcaac
gacggcaacgcctaccgcgcgcgttggagcgtgcgccgcgcccgcacgcgcgcggccggc
gcgctgcaaccgaccgcgatgaccttgcacacgctgccgcagttgcaaccgatcggcgcc
accaagacggaagtcaagcaggaaatcgagcaacgcatcggcctgaacttcgaacagttc
acccgcgccgtgctgctggcgcagaacgagttcgccactttcctcaaatcgcaggacgac
gaacgcggcgtgctgatggagacgctgacgggcagcacggtctacagcgagctgtcgaag
cgcgcgcacgagcgccagaagctggaattgcacaagctgcagcagttgcgcgaccggctg
gccgaccagcagccgctgtccggcgaacagcgcgcggaaacggagcggctggcacgtgag
gccgacgcggccctggcggcgctcgatgcccggcgcggtgtgctggaagcggacctgcgc
tggcacgaacaggcggtgcggctggcgcaaggcgtggacgaggcccgcgccgaactggca
cgacgcagcgccgccgtcggcgacgcggcgccgcgccatgcggtgctggcgcgctatgac
gccgtgcaggaagcgcgtccgctgcacgacgagatcgtacgactggccgcggaggcggcg
caggcgcgtgccggcgcggcgcgctgcgaacaggaagcggagcaggcccgcctggcgcag
gaagcggccggcgccgctgcgcagcagttgcaggccgcgctggcggaggcggaggccgcg
caggtggctgccgccccgcagctggaccaggccaaggcgctggacgcccgcatcgaggcg
atgcagccggcgcacacgcaggcgcgggccacgcgcgacgccgccgtggccgtcgtcacg
caggccgcggccgcgctgtcggacaagcgcaacgaccgccgcaagctgcaggaggcgcag
cagttcggccaggcctggctggccgagcatcgccactgggccactttgggccagcagtgg
acgcgctgggacgcgctgttcgcccaggccggccgcgccctgggccaggccaacgcgttt
gccgccaagctggagcaggcgcgcggcggcatgacgcagcagcgcgacgccgagacggcc
gcgcgcgaccagctggagacggcggctcggcgcgcaacggagctgctggcccagcgcgac
gcggccatgcaggcgttggcggcattcgacggcgacgcgttgcaacaacgccgcgcggca
ctggaacggcgccgcgccgccttggccgcaggtgaaaaagcctggctggacctggccgcg
aagacgacgcgcgcgacggcgctcgatgaacagggcgcccagttgcgcgccacgctggcg
caggcccaggcgcaactggcgcaggcgcagcaggatcacgccgcgcgcaaggcggcgctg
gcgcaggccgaacgcgcgctggcgctggccgaagcggcctgcggcgacagcgtcgaggcg
ttgcgcgacacgctggaggacggcctgccctgccccgtctgcggcgccgagcagcatccg
tatcacggcaacgacaagctgcacgccctgctggaccagttgcgccaggacgtggcgcag
ggccgcgccgcgctggaccagctgatcgaacacggcgccacccagcgcgcgctggtcaac
gccagcacgggccagttgacgcaggtggataccgaacgcactgcgctggcggccgcgctg
gcgacggcgcagcagcgctggcacgccgcgcgggaagccatcgcggcggcgggcgacggc
agtccggcggcggacggcaccgagcagtggctggccgaccgcctggccgacgtggcggcc
ggatcgcaggcgctggaacaggacgaggccgggctgcggcgcgcggccgcggcgcgcgat
gccgcccagcgcgcgtacgacgaggcgatggcggcgcagggcaagtggcaggccgccgcc
gccaatgcggccaccgcgctggcgcaggccgcggcgcagctggaagcgctgcagtcgcag
cagctggacgcccaggcccggctcgatacgctgctggacgagctggaaccggcgttcgac
ggcatcgagcaggacggcgactggaaggaatcctggcgcgcgcatccggagcatttccac
gcgctgcgccaggccgaaggccgccagtggctgacccagcacgccgccatcgacgagcgc
gccgtcgcgctggccgcgctggaagtggagctgaacgcactgcacgaggcgcacggcaag
gcggccgccgacgagcaggccgcccgcgccgcgttcgcggccgccgacgaggccttgcag
caggcccgcacgcagcgcctggccttgtggaacggcacgccggtgcgcgaggtggaggca
cgcctgcgcgccgccggggacgcggcccgcgcccgcctgcaggcgcagcaggaagcggcg
cagcaggcggcgcaacagcgcacccgttgcgacgaagcgctggcacagggccgccgccgt
atcggcgagctggaggaagccagcgtcgccgcgacggaacggctggcgacctggctggcc
ggattccagcaggcgcgcacggagccggacctgttcacgcccgcgcccgacgtcggcatc
gcatcgctggacgagctgcgcgcgctgctggcgcatccgctggaagccatccgcgccgaa
cggcaggccttgcaggcgctggagcaggccgccgcgcaggcccgcaccgtgctgcaggag
cgcgaggcgcaatgcgcgcgtcaccgcgaaacggcaccggccgatccggcgcagaccttg
gacacgctgcgcgagctgctgcaggcgctggccgcggaacgccatgcggcgcacgagcaa
gccaccggctaccggctggcgctggcgcacgacgacgaacggcgccgccgcgccagcgac
gtgctggccgacatcgagcgacaggaagcggtcgaacgcaagtgggcgcgcctgtccgag
ttgatcggctccgccgacggcaagaagttccgcaactacgcgcagcagttcaccttggat
gtgctgctgggctacgccaatgcccacctggggcaactggcgccgcgctaccagctgcag
cgcatcgacaatccggcgcaaccgtcgctcggcctgctggtgcgcgacctgcacatgggc
gacgatatgcgctcggtgcattcgctgtcaggcggtgaatcgttcctggtctcgctggcg
ctggcgctgggactggcctcgctgtcgtccaaccgggtgcgcgtcgaatcgctgttcatc
gacgaaggcttcggcagcctggacgcggaaacgctgcgcgtggcgatggacgcgctggac
aacctgcagtcgatggggcgcaaagtcggcgtcatctcgcacgtgcaggacatgacggaa
cggatcgccacccgcatctcggtgctgccgggggctggcgggcgcagcacggtcagcgtc
cactga
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