Pseudoduganella armeniaca: C9I28_20020
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Entry
C9I28_20020 CDS
T05378
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
masz
Pseudoduganella armeniaca
Pathway
masz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
masz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C9I28_20020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
masz03019
]
C9I28_20020
Enzymes [BR:
masz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C9I28_20020
Messenger RNA biogenesis [BR:
masz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C9I28_20020
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Flavi_DEAD
NSs
CMS1
Motif
Other DBs
NCBI-ProteinID:
AVR97665
UniProt:
A0A2R4CDH6
LinkDB
All DBs
Position
complement(4599721..4600962)
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AA seq
413 aa
AA seq
DB search
MSFTTLGLAPSLLDAIAAIGYQTPTPVQAAAVPAALAGRDVLGAAQTGSGKTAAFALPML
QALLAREGTRRGLHGLVLVPTRELAAQVGEAIRALVQHLPSTIKVTIAFGGVSINPQMMA
LRGGTDILVATPGRLLDLVEHNAIKLDHTATLVLDEADKLLDMGFAEEIARILALLPAAR
QNLFFSATFPPSVQALATSLLRDPARVDVQADAASTPNIEQRAFAVDPLRRLQLLKTLIK
QHGWRQVLVFVATKYASEHVADKLRRNGIAAEAFHGDFSQGARTEVLADFRAGRLHVLVA
TDVAARGIDIAQLPVVVNFDLPRSPADYTHRIGRTGRAGASGMAVSFVSADTEQHFRLIE
KRQGMRVPRETLAGFEPVQTASPPASAATDTVNGGIKGKRKSKKDKLREAAAK
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcaccacgctgggcctcgcgccttcacttctcgacgccatcgccgccatcggc
taccagacccccacaccggtgcaggccgcggccgtacctgccgcgctggcggggcgcgac
gtgctgggcgccgcgcagaccggctccggcaagacggcggcgttcgcgctgccgatgctg
caggcgctgctggcgcgcgagggcacccggcgtggcctgcacggcctcgtgctggtgccc
acgcgcgagctggcggcccaggtgggggaggcgatccgcgcgctggtgcagcacctgccg
tccaccatcaaggtgacgatcgccttcggcggcgtctcgatcaatccgcagatgatggcg
ctgcgcggcggcaccgacatcctggtcgccaccccgggccgcctgctcgacctggtcgag
cacaacgccatcaagctcgatcacacggccacgctggtgctggacgaggcggacaagctg
ctggacatgggctttgccgaagagatcgcgcgcatcctggcgctgctgcccgctgcgcgg
cagaacctgttcttttcggcgaccttcccgccgtccgtgcaggcactggcaacgagcctg
ttgcgcgacccggcgcgagtcgacgtgcaggcggacgcggcatccacgccgaacatcgaa
cagcgcgcctttgccgtcgatccgctgcgccgcctgcaactgctgaagaccctgatcaag
cagcacggctggcgccaggtgctggtattcgtcgcgacgaaatatgcgtccgagcacgtg
gccgacaagctgcgccgcaacggcatcgccgccgaggccttccacggcgatttcagccag
ggcgcgcgcaccgaagtgctggcggacttccgcgctggccggctgcacgtgctggtcgcc
accgacgtcgccgcgcgcggcatcgacatcgcgcaactgccggtggtggtcaatttcgat
ttgccgcgctcgccggcggactacacgcaccgcatcggccgcacgggccgcgcgggcgcc
agcggcatggccgtcagtttcgtgagcgcggacacggagcagcatttccgcctgatcgag
aaacgccagggcatgcgcgtgccgcgcgagacgctggccgggttcgagccggtgcagacg
gcatctccgcctgccagcgccgcgacggacaccgtcaacggcggcatcaagggcaagcgc
aagagcaagaaggacaagctgcgcgaggccgcggcgaaataa
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