Pseudoduganella armeniaca: C9I28_21125
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Entry
C9I28_21125 CDS
T05378
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
masz
Pseudoduganella armeniaca
Pathway
masz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
masz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C9I28_21125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
masz03400
]
C9I28_21125
DNA repair and recombination proteins [BR:
masz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C9I28_21125
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C9I28_21125
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
DEAD
UVR
AAA_30
Kinesin
P-loop_SecA
HEM4
Microtub_bd
MEDS
Methyltransf_25
Motif
Other DBs
NCBI-ProteinID:
AVR97857
UniProt:
A0A2R4CDY5
LinkDB
All DBs
Position
4837959..4840043
Genome browser
AA seq
694 aa
AA seq
DB search
MADLSLAGSPEPTVITFPDSPFKLHQPFPPAGDQPTAIEQLCEGIADGLSFQTLLGVTGS
GKTYTMANVIARMGRPAIVFAPNKTLAAQLYSEFREFFPQNAVEYFVSYYDYYQPEAYVP
QRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTLRA
KDKVSQRDIIARLIQMQYTRNEVDFGRGTFRVRGDTVDIFPAEHAELAVRLEMFDDELDS
IQLFDPLTGRVRQKIPRFTVYPGSHYVTPRSTVLRAIESIKAELRDRLEFFRNEGKLIEE
QRLEQRTRFDLEMMAEIGFTKGIENYSRHLSGAMPGQPPPTLIDYLPKDALMFMDESHVL
IGQLSAMYNGDRSRKTNLVDYGFRLPSALDNRPLKFEEFEAKMRQTIFVSATPADYENAH
ADQVVEQVVRPTGLVDPQVIVRPARTQVDDLMSEITDRIAKNERVLVTTLTKRMSEQLTE
YLSDHGIKVRYLHSDIETVERVEILRDLRIGTFDVVVGINLLREGLDLPEVSLVAILDAD
KEGFLRSERSLIQTIGRAARNLNGVALLYADQMTDSMKKAIDETERRRAKQIAHNEKHGI
VARGVNKVIKDMIDGVYDPNKESTQLQAAQETAKYETMSQKQVSKEIKRLEKLMVDHAKN
LEFEKAAQVRDQLHLLKEQLFGAPGADVISITGK
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggctgatttatcacttgccggtagccccgagcctaccgtcatcacctttcccgattcg
cccttcaagctgcaccagcccttcccgcccgccggcgaccagcccaccgccattgagcag
ctgtgcgagggcattgcggacggcctgtcgttccagaccttgctgggcgtgacgggctcc
ggcaagacctacacgatggccaacgtgatcgcccgcatgggccggcctgccatcgtgttc
gcgccgaacaagacgctggccgcccagctctacagcgagttccgcgagttcttcccgcag
aacgccgtcgagtacttcgtttcgtactacgactactaccagccggaagcctacgtgccg
cagcgcgacctgttcatcgaaaaggactcctcgatcaacgagcatatcgagcagatgcgg
ctgtcgtgcaccaagtcgctgatggagcggcgcgacgtcgtcatcgtggccacggtctcg
gccatctacggtatcggtaacccgaacgaataccaccagatgatcctgaccctgcgcgcc
aaggacaaggtcagccagcgcgacatcatcgcccgcctgatccagatgcagtacacccgc
aacgaagtggacttcggccgcggcacgttccgcgtgcgcggcgacaccgtcgacatcttc
ccggccgaacacgccgagctggccgtgcgcctggagatgttcgacgacgagctggactcg
atccagctgttcgacccgctgaccggccgggtgcgccagaagatcccccgcttcaccgtc
taccccggctcgcactacgtcacgccccgctcgacggtgctgcgcgccatcgagagcatc
aaggccgagctgcgcgaccggctggaattcttccgcaacgagggcaagctgatcgaggaa
cagcgcctcgagcagcgcacccgcttcgacctggagatgatggcggaaatcggcttcacg
aagggcatcgagaactactcgcgccacctgtccggcgccatgccggggcagccgccgcca
accctgatcgactatctgccgaaggacgcgctgatgttcatggacgagtcgcacgtgctg
atcggccagctctcggcgatgtacaacggcgaccgctcgcgcaagaccaacctggtcgac
tacggcttccgcctgccgtccgcgctggacaaccggccgctgaagttcgaggaattcgag
gccaagatgcgccagacgatcttcgtctcggccacgccggcggactacgagaacgcgcat
gccgaccaggtggtcgagcaggtcgtgcgtcccactggcctggtcgatccgcaggtcatc
gtgcgcccggcccgcacccaggtggacgacctgatgtccgagatcaccgatcgcatcgcc
aagaacgagcgcgtgctggtgaccacgctgaccaagcgcatgtccgagcagctgacggaa
tacctgtcggaccacggcatcaaggtgcgctacctgcacagcgacatcgagacggtggag
cgggtggaaatcctgcgcgacctgcgcatcggcacgttcgacgtcgtggtcggcatcaac
ctcctgcgcgagggcctcgacttgccggaggtgtcgctggtggcgatcctggacgccgac
aaggaaggcttcctgcgttccgagcgttcgctgatccagaccatcggccgcgccgcccgt
aacctgaacggtgtcgcgctgctgtacgcggaccagatgacggattcgatgaagaaggcc
atcgacgagaccgagcgccggcgcgccaagcagatcgcgcacaacgagaagcacggcatc
gtcgcgcgtggcgtcaacaaggtcatcaaggacatgatcgacggcgtctacgatccgaac
aaggaatcgacgcagctgcaggccgcgcaggaaacggccaagtacgaaacgatgagccag
aagcaggtgtcgaaggagatcaagcgcctggaaaaactgatggtcgaccatgccaagaac
ctggagttcgagaaggccgcgcaggtgcgcgaccagctgcacctgctgaaggagcagctg
ttcggggcgcctggggcggatgtgatttcgatcacgggcaagtaa
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