Pseudoduganella armeniaca: C9I28_24285
Help
Entry
C9I28_24285 CDS
T05378
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
masz
Pseudoduganella armeniaca
Pathway
masz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
masz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C9I28_24285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
masz03019
]
C9I28_24285
Enzymes [BR:
masz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C9I28_24285
Messenger RNA biogenesis [BR:
masz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C9I28_24285
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AVR98409
UniProt:
A0A2R4CFK2
LinkDB
All DBs
Position
complement(5587830..5589320)
Genome browser
AA seq
496 aa
AA seq
DB search
MSEIETPSASGVQPAAPAQVRFSDFGLSPDILRALTDQGYEYPTPIQAQAIPVVLQGRDV
MGAAQTGTGKTAGFSLPIIQLLLAHASPSMSPARHPVRALILTPTRELAVQVAENVAAYS
RHTPLRSTVVYGGVDMKPQTAILRNGVEIIIATPGRLLDHIEQKTVSLGQVQMFVMDEAD
RMLDMGFLPDLQRIINLLPKQRQNLMFSATFSPEIKKLANSFLNSPVTIEVARSNATADK
VTQVVYKVLEEHKRDAVAHILRSREMKQVIVFSNTKIGASRLARGLEQEGMKASAIHGDK
TQQERMAALEAFKRGEIDVLVATDVAARGLDISDLPCVINYDLPYNAEDYVHRIGRTGRA
GASGDAISIYSDKDERLLADIEKLIKQTIKRGELQGFSPSARANDERRPVRRDGDRAGAG
AGAGERGPRPERSGERERYGRPNGPSPRSNKVDPWFLKPYEPTRSTRPATPEATTSQAPS
KPKQKIAALLGGLPKN
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaattgaaaccccttccgcctctggcgtccagcctgcggcacccgcccaggtg
cgtttctccgacttcggcttgtctccggacatcctgcgcgccctgaccgaccagggttac
gaatacccgacgccgatccaggcgcaggcgattcctgtggtgttgcagggacgcgacgtc
atgggcgcggcccagaccggtaccggcaagacggccggcttctcgctgcccatcatccag
ctgctgctggcgcacgccagcccgagcatgagcccggcgcgccacccggtgcgcgcgctg
atcctgacgccgacgcgcgagctggccgtgcaggtggccgagaacgtggcggcttactcg
cgccacacgccgctgcgttcgaccgtagtctacggcggcgtcgacatgaagccgcagacc
gcgatcctgcgcaacggcgtcgagatcatcatcgccacgccgggtcgcctgctcgatcac
atcgaacagaagacggtctcgctcggccaggtgcagatgttcgtgatggacgaagcggac
cgcatgctggacatgggcttcctgcccgacctgcagcgcatcatcaacctgctgccgaag
cagcgccagaacctgatgttctcggccacgttctcgcccgagatcaagaagctggccaac
agcttcctgaacagcccggtgacgatcgaggtcgcgcgcagcaatgccacggccgacaag
gtgacgcaggtggtctacaaggtgcttgaagagcacaagcgcgacgccgtcgcgcacatc
ctgcgctcgcgcgagatgaagcaggtgatcgtgttctcgaataccaagatcggcgcctcg
cgcctggcgcgcggcctggagcaggaaggcatgaaggcctccgccatccacggcgacaag
acgcagcaggaacgcatggccgcgctggaagcgttcaagcgcggcgagatcgacgtgctg
gtggccaccgacgtggcggcgcgcggcctggacatctccgacctgccgtgcgtgatcaac
tacgacctgccgtacaacgcggaagactacgtgcaccggatcggccgcacgggccgtgcc
ggcgcctcgggcgacgccatctcgatctattcggacaaggacgagcgcctgctggccgac
atcgagaagctgatcaagcagaccatcaagcgcggcgaactgcaaggcttcagcccatcg
gcgcgcgccaatgacgaacgccgcccggtccgtcgcgacggcgatcgcgctggcgctggc
gccggcgccggcgagcgcggcccgcggccggaacgcagcggcgagcgcgaacgctacggc
cgcccgaacggcccgtcgccacgctccaacaaggtcgatccatggttcctgaagccatac
gagccgacccgctcgacgcgcccggcgacgccggaagcgaccaccagccaggccccgtcc
aagccgaagcagaagatcgcggcgctgctgggcggcttgccgaagaactga
DBGET
integrated database retrieval system
