Pseudoduganella armeniaca: C9I28_26815
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Entry
C9I28_26815 CDS
T05378
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
masz
Pseudoduganella armeniaca
Pathway
masz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
masz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C9I28_26815 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
masz03021
]
C9I28_26815 (rpoB)
03400 DNA repair and recombination proteins [BR:
masz03400
]
C9I28_26815 (rpoB)
Enzymes [BR:
masz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C9I28_26815 (rpoB)
Transcription machinery [BR:
masz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C9I28_26815 (rpoB)
DNA repair and recombination proteins [BR:
masz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C9I28_26815 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RnfC_N
HhH-GPD
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AVR98828
UniProt:
A0A2R4CH88
LinkDB
All DBs
Position
complement(6136037..6140152)
Genome browser
AA seq
1371 aa
AA seq
DB search
MHYSFTEKKRIRKSFAKRANVHNVPFLLATQLESYENFLQEHTPVASRKNEGLQSAFTSI
FPIVSHNGFARLEFLSYVLGDPAFDVKECQLRGLTFASPLRAKVRLVILDKESPTKPVVK
EMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILYFRVDRRRKMPVSILLKAIGMTPEQILANFFVFDNFNLRSE
GGEMEFVAERLRGEVARFDIVNPKDGKTIVTKDKRINAKHVREIEAAGIQHISVPEDYLL
GRVLAKNIVDPETGEVVASANDELTEEVLNRLRDSNISAIQTLYTNDLDQGAYISQTLRI
DDTADQTAARIAIYRMMRPGEPPTEESVEALFNGLFYSADRYDLSAVGRMKFNRRIGRDE
LTGAMTLSNEDVLAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVER
AVKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRK
VENSMVTDKIDYLSAIEEGRYIIAQANAKINDEGKLVDELVSAREAGETILVSPERIQYM
DVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKALVGTGIERTVAVDSG
TTVQALRGGVVDYIDAGRVVIRVNDEEAQAGEVGVDIYNLIKYTRSNQNTNININQRPIV
KVGDRVAKGDVIADGASTDLGELALGQNMTVAFMPWNGLNFEDSILISENVVKDDRYTSI
HIEELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEVQAGDTLVGKVTPKG
ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIPRDKRAQQIIDD
ELKRYRLDLNDQMRIVEGDAFQRLEKMLIGKVVNGGPKKLAKGAQITKEYLADLDKYHWF
DIRPADDDAATALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELQPGVQKMVKVYLAVKR
RLQSGDKMAGRHGNKGVVSRIVPVEDMPYMADGTPADVVLNPLGVPSRMNVGQILETHLG
WAAKGLGIRIGEMLQQQIKVEEMRKYLTTVYNESGAKEDIASFSDEEIMNLAHNLKKGVP
FATPVFDGAHESEIRRMLDLAYPDEIATKLGMTPSKNQVTMYDGRTGEAFERKVTVGVMH
MLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEML
TVKSDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERT
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atgcactactcatttactgagaagaaacgcattcgcaaatcattcgcgaaacgcgccaac
gtccacaacgttccgttcctgctggcgacccagctcgagtcttacgaaaacttcctgcag
gagcacactccggttgcctcccgcaagaacgaaggcctgcaatcggccttcacttccatc
ttcccgatcgtttcgcacaacggtttcgcacgcctggaattcctgtcgtacgtgctgggc
gaccctgcgtttgacgtgaaagagtgccaactccgtggcctgaccttcgcatcgccgctg
cgcgcgaaagtgcgcctggtgatcctggacaaggaatccccgaccaagccggtcgtcaag
gaaatgaaggaacaggaagtctacatgggcgaactgcccctgatgacgaccaccggttcg
ttcgtgatcaacggtaccgagcgcgtgatcgtttcgcagctgcaccgttccccgggcgtg
ttcttcgagcacgaccgcggcaagacgcactcgtccggcaaactgctgttctcggcccgt
atcatcccttaccgcggctcgtggctggacttcgagttcgacccgaaggacatcctgtac
ttccgcgtcgaccgtcgccgcaagatgccggtgtcgatcctgctgaaggcgatcggcatg
acgccggaacagatcctggcgaacttcttcgtgttcgacaacttcaacctgcgctcggaa
ggcggcgagatggaattcgtcgccgaacgcctgcgcggtgaagtcgcgcgcttcgacatc
gtcaatccgaaggatggcaagacgatcgtcacgaaggacaagcggatcaacgccaagcac
gtgcgtgaaatcgaagccgccggtatccagcacatttccgtgccggaagactacctgctg
ggccgcgtgctggccaagaacatcgtcgatccggaaacgggcgaagtggtcgcatcggcc
aacgacgagctgactgaagaagtgctgaaccgcctgcgcgattcgaacatctcggccatc
cagacgctgtacacgaacgacctggaccagggtgcgtacatctcgcagaccctgcgcatc
gacgacaccgccgaccagaccgccgcccgcatcgcgatctaccgcatgatgcgtcctggc
gaaccgccgaccgaagagtcggtcgaagcgctgttcaacggcctgttctacagcgccgac
cgctacgacctgtccgccgtgggccgcatgaagttcaaccgccgtatcggccgtgacgaa
ctgacgggcgccatgacgctgtcgaacgaagacgtgctggccgtgatcaagatcctggtc
gagctgcgcaatggccgcggcgaagtggacgacatcgatcacctgggtaaccgtcgcgtg
cgttgcgtgggcgaactggccgaaaaccagttccgcgccggtctcgtgcgtgtcgagcgt
gccgtcaaggaacgcctgggccaggccgaagccgacaacctgatgccgcatgacctgatc
aacagcaagccgatctcggccgcgatccgtgagttcttcggttcgtcgcagctgtcccag
ttcatggaccagaccaacccgctgtccgagatcacccacaagcgccgtgtttccgcactg
ggcccgggcggtctgacgcgcgaacgcgccggcttcgaggtgcgcgacgtgcacccgacc
cactacggccgcgtctgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaac
tcgctggcactgtacgcccgcctgaacgaatacggcttcctggaaacgccgtaccgcaag
gtcgagaacagcatggtgaccgacaagatcgattacctgtccgcgatcgaagaaggccgc
tacatcatcgcccaggccaatgccaagatcaacgacgaaggcaagctggtcgacgagctg
gtctcggcccgtgaagccggcgaaacgatcctggtgtcgccagagcgcatccagtacatg
gacgtggcgcctggccagatcgtctccgtggcagcctcgctgattccgttcctggaacac
gatgacgcgaaccgtgcactgatgggcgccaacatgcagcgccaggccgtgccttgcctg
cgtcctgaaaaggcgctggtcggtaccggtatcgaacgcaccgtggcagtcgactccggc
acgaccgtgcaggcgctgcgtggcggcgtggtggactacatcgatgcaggccgcgtggtg
atccgcgtcaacgacgaagaggcgcaagccggtgaagtcggtgtggacatctacaacctg
atcaagtacacccgttcgaaccagaacaccaacatcaacatcaaccagcgtccgatcgtc
aaagtgggcgaccgcgtggccaagggcgacgtcatcgccgacggcgcatcgaccgacctg
ggcgaactggcactgggccagaacatgaccgtggcgttcatgccatggaacggcctgaac
ttcgaggactcgatcctgatctcggaaaacgtcgtcaaggacgaccgttacacctcgatc
cacatcgaagaactgtccgttgtcgctcgcgacacgaaactgggcgcggaagaaatcacc
cgcgacatttcgaacctggctgaaaaccagctggcacgcctggacgaatcgggcatcgtc
tacatcggcgccgaagtgcaggctggcgacacgctggtcggtaaggtgacgccgaagggc
gaaacccagctgacgccggaagagaagctgctgcgcgcgatcttcggcgaaaaagcatcc
gacgtgaaagacacgtcgctgcgcgtgccttcgggcatggtcggtaccgtcatcgacgtg
caggtgttcacccgcgaaggcatcccgcgcgacaagcgcgcccagcagatcatcgacgac
gagctgaagcgctaccgcctggacctgaacgaccagatgcgtatcgtcgagggcgacgcc
ttccagcgtctggaaaaaatgctgatcggtaaagtcgtcaacggcggtccgaagaagctg
gcgaagggcgcccagatcaccaaggaatacctggccgacctggacaagtaccactggttc
gacatccgtccggcggacgacgatgcggccacggccctggaagcgatcaaggaatcgatc
gccgagaagcgccaccagttcgacctggccttcgaagagaagcgcaagaagctgacgcag
ggcgacgagctgcagcctggcgtgcagaagatggtcaaggtctacctggccgtcaagcgc
cgcctgcagtcgggcgacaagatggcaggccgccacggtaacaagggtgtggtctcgcgt
atcgtgccggtggaagacatgccgtacatggccgacggtacgccggccgacgtcgtgctg
aacccgctgggcgttccatcccggatgaacgtgggtcagatcctggaaacgcacttgggc
tgggccgccaagggcctgggtatccgtatcggcgagatgctacagcagcagatcaaggtc
gaagagatgcgcaagtacctgacgaccgtgtacaacgagtccggtgccaaggaagacatc
gcgtcgttcagcgacgaagagatcatgaacctggcgcacaacctgaagaagggtgtgccg
ttcgcgacgccggtgttcgacggcgcgcacgagtccgaaatccgccgcatgctggacctg
gcgtatccggacgagatcgcgaccaagctgggcatgacgccttcgaagaaccaggtcacg
atgtacgacggccgcacgggcgaagcgttcgagcgcaaggtcacggtcggcgtcatgcac
atgctgaagctgcaccacctggtcgacgacaagatgcacgcccgctcgaccggcccatac
tcgctggtgacgcagcagccgctgggcggtaaagcccagttcggtggccagcgcttcggt
gagatggaggtgtgggcactggaagcgtacggcgcatcgtacgtgctgcaagagatgctg
accgtgaagtccgacgacgtgaacggccgtacgaaggtgtacgagaacctcgtcaagggc
gatcacgtgatcgatgccggcatgccggaatcgttcaacgtgctggtgaaagagatccgt
tccctgggtatcgatatcgacctggaacgcacctga
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