Metamycoplasma arthritidis: MARTH_orf396
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Entry
MARTH_orf396 CDS
T00724
Symbol
vacB
Name
(GenBank) VacB-like exoribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mat
Metamycoplasma arthritidis
Pathway
mat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MARTH_orf396 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mat03019
]
MARTH_orf396 (vacB)
03016 Transfer RNA biogenesis [BR:
mat03016
]
MARTH_orf396 (vacB)
Enzymes [BR:
mat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MARTH_orf396 (vacB)
Messenger RNA biogenesis [BR:
mat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MARTH_orf396 (vacB)
Transfer RNA biogenesis [BR:
mat03016
]
Prokaryotic type
tRNA degradation factors
MARTH_orf396 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
PCI
S1
OB_RNB
Mob_Pre
Motif
Other DBs
NCBI-ProteinID:
ACF07261
UniProt:
B3PMK9
LinkDB
All DBs
Position
354343..356499
Genome browser
AA seq
718 aa
AA seq
DB search
MFPKKRFNNKPNTINIKEEDVLNLIKKFKTLSFLKIAKELKLKSCDNHYLTKFLYSLLDA
NKIDKTKNGDFYLLNYVCEVENQISITNKRLGFIDLDNALETNNDENKCSAFVAPFQLKN
VLDKDLVQAKIYSYQDENNKTLYKGVISNVIKHNCKNIIGFIEFKENRPIFNAFDERNKA
NFFFINTSNFPKIIKSTDLVKCIILEPNAKSVAIAFDSIITNLNDKNYVIKKIMAANDVK
GGFGLEVLEKAATIPQEIIPEDYDNRVDLTSLLTVTIDGLDTKDFDDAISCSKLENGNYK
LFIHIADVSHYVKEGDAIDKEALERGTSIYLPDKVIPMLPFALSNGICSLNPNVIRACLT
LELELDNHGKNVSSKVYASLIKSDYRLTYNEVNDFFNQKIEVPNEINNLLSRAREISKIL
RAKKIKDGYVDFEIEEPKIIMEDNDIKDIVIRKDGEAEKLIEDFMVRANETIAEMMKELK
IPSIYRIHDKPETLKLSALQELLGFVGMKNIQVPFDGSPKSFEIMVNKIKAIKLDDYLKM
ALLRTMQKAQYSSNNIGHFGLASSAYSHFTSPIRRYPDLLLHRLIRKYILNGKFDPKNYE
KVKDEIEAIAQMNSEAEKTAMTVERSVVDVMKSKFFEKFINKTFVAQLVSIEKFGAFFNI
EEYQASVLIRFEDDEDGLIKISSYEAKGKSKTLKVGSEYKIAITSIDHEKGNINAKLV
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtttccgaaaaaaagatttaataacaaaccaaacaccatcaacataaaagaagaagac
gttttaaatttaattaaaaagtttaaaacgctttcttttcttaaaatcgccaaagaactt
aaactgaaatcctgcgataatcattatttaacgaaatttttatattcacttttagatgct
aataaaattgacaaaaccaaaaatggtgatttttatcttttaaattatgtttgtgaagtt
gaaaatcaaatttcaatcactaacaaaagacttggttttattgacctagataatgcttta
gaaaccaataacgacgaaaataaatgtagcgcatttgtggcgccatttcaacttaaaaac
gtcttagataaagatcttgtacaagcaaaaatctattcataccaagacgaaaataataaa
acattatacaaaggcgtaattagcaatgtaatcaaacacaattgcaaaaatattattgga
ttcattgaatttaaagaaaataggccaatttttaacgcctttgacgaacgaaataaagct
aactttttctttattaatactagtaatttccccaagattattaaaagcactgatttagta
aaatgtattattcttgagcctaacgcaaaatcagttgcaattgcttttgactcaattatc
actaatcttaatgataaaaattatgtaattaaaaaaattatggcggcgaatgatgtcaaa
ggcggctttggtctagaagttctagaaaaagcagctactattcctcaagaaattattcct
gaggattatgataatcgagttgatctcacttctttactgacagttaccattgatggctta
gatactaaggactttgatgacgcaatttcttgtagtaaattagaaaatggcaattacaaa
ttgttcattcatattgctgatgtttcacattacgttaaagaaggcgatgccattgataaa
gaggcactagaacgaggcacaagtatttacttgccggataaagtaattccgatgcttcct
tttgctttatcaaatggtatttgctcacttaaccccaatgtaatacgagcctgtctaacc
ttagagcttgaactagataaccatggcaagaatgttagttcaaaagtttatgcaagttta
atcaaatcagattatcgtttaacttataatgaagtaaatgatttctttaatcaaaaaatt
gaagttcctaacgagattaataatcttcttagtcgtgctagagaaatatcaaagattcta
agagctaaaaaaatcaaagatggttatgtggatttcgaaattgaagagcctaaaatcatc
atggaagacaatgatattaaggatattgtcataagaaaagatggcgaagcagaaaagtta
attgaagatttcatggtgagggctaatgaaactattgctgaaatgatgaaagagttgaag
attccctcaatctatcgtattcatgataagcctgaaaccttaaaacttagtgccttacaa
gagcttcttggttttgtcggtatgaaaaatattcaagttccatttgatggctctcctaaa
tcttttgaaataatggttaataaaattaaagccattaaattagatgactatttaaaaatg
gcattgctaagaacaatgcaaaaagcccaatactcttctaataatattggtcattttggt
cttgcttcaagtgcttattcacattttactagccccattagaagatatcctgacttgcta
ttacatcgcttaattagaaaatatattcttaacggaaaatttgatcccaaaaactacgag
aaagttaaagatgaaatcgaagccattgcccaaatgaatagcgaagcggaaaaaactgct
atgacagtggaacgtagtgttgttgatgtgatgaaaagcaaattctttgaaaaatttatt
aataaaactttcgtcgcgcaattagtaagtattgaaaaattcggagcattttttaatatt
gaagagtatcaagcgagcgtacttataagattcgaagatgacgaagatggcttaattaag
atatcaagttacgaagctaaaggtaaaagcaaaactttaaaagtaggtagtgaatataaa
attgccattacttcgattgatcatgaaaaaggcaatatcaacgccaaattagtttaa
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