Molothrus ater (brown-headed cowbird): 118683985
Help
Entry
118683985 CDS
T11569
Symbol
LTN1
Name
(RefSeq) E3 ubiquitin-protein ligase listerin isoform X1
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
mate Molothrus ater (brown-headed cowbird)
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mate03009
]
118683985 (LTN1)
04121 Ubiquitin system [BR:
mate04121
]
118683985 (LTN1)
Enzymes [BR:
mate01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118683985 (LTN1)
Ribosome biogenesis [BR:
mate03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
118683985 (LTN1)
Ubiquitin system [BR:
mate04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118683985 (LTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
LTN1_E3_ligase_5th
zf-RING_2
HEAT_GCN1
zf-ANAPC11
FANCL_C
zf-rbx1
RINGv
zf-RING-like
zf-C3HC4
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
118683985
NCBI-ProteinID:
XP_036234524
LinkDB
All DBs
Position
2:96150102..96184283
Genome browser
AA seq
1765 aa
AA seq
DB search
MGGKNKQRTKGNLRPSSSGRAAELLAKERGTVPGFIGFGTSQSDLGYVPAIQGAEEVDSL
VDADFRMVLRKLSKRDVTTKLKAMQEFGTMCKEREAEVVKGVLPYWPRIYCKISLDHDRR
VREATQQSFEQLILKVKKHLAPYLKSIMGYWLIAQCDTYSPAASAAKVAFEKAFPLSKQP
EALVFCKDEILNVLQDHLLKETADTLSDPQTVPEEEREAKFFRILTCSLLALKKLLSTLP
KKEMHSLEEKLMSLLSQNKFWKYSKNNVSQVRSAFFELISAFCQHLPEVVKAEAPRVCPA
VLLSIDDSDAVVCPALWEAVLYTITTIEDCWSHVNARKGVLPKLWTVLREGGRGLATVIY
PNLLPFISKVPPDVVEPKLEYFRVFFSSIIQGLSNERTIASPSESSAIITAFMECLCFAV
LQKGEDQSQIHQMLICDQLIPFVSAVLKDPKLQSGPLFYQTAEMLSSWEAKAELSNDDGT
DEVFQKLLSDFWGHLLKMCILHVDRLDADRKLLFAISGMLEILHNPKSAMKPSNRKSLKI
RFTDEDEFERNTESRKFMEIRNGDSEIQADLQQTSHLRKEPLENLVCNLAELSIVYVNEQ
KSEQHLNFLSALLNTFSSNRVFQVLLEQGNNVSPAQAESQNEVKAHNRSPSVQFLYLNLI
TWLKEDWRKDTHFLVDILYSVLHCCNNNDERKVILDDLVKMDLKWVIFLQIIQKACSGTT
KLSLVSDWLKGDTLGERLVMLADDLCHLGLKPRAASSGSASSERWTLLSLVLSQHVKSES
LIGETFVERIIDKLQAALSKAKDLSEAGDTEPSVSLICDVASSFFSSVKGCLLMPSSEDL
LLTIFQLCAQRQDATHLSDVLVCKLKHTWMSGVNSLVHQLQGTQSNFLFKAALWVKNQVQ
SSSLDVKRLQVLISAVSDLLLKLMEADGQSGCLVRAYVEHVTPNKIEWGKLHESLCSEWM
HKPLLEGRLSMNCEPLGSSVKLCGTTKLPGHLCTSALLSKIVLLQLKNHVVHGDHDSERK
KIDNIIAELLYSLQWIEELENPPYLLLEYLHMLEEMDITYEEFSTLSSTANLQQTIFVRS
EEHGRLWSLTMAKVIRAENAVSWERKELFKTTEGFLPLTEGRLHTLQCLSSFLTEEEKRE
LVFHCVAKLMTCTQTELSSTDGAFGCLSILNSCLKDRSIDCDHLLPAVLKIIISWKNDNE
DSFLFSCSLKEASAQLLGFNIELMRYLPLLLKYSAAPLADNEWDFLMCSMLAWLETTSES
RLLYHIPLVQIFACVSCDLASALSTYFEAAAPYSTANLPKNLVSEWKEFFSEGIHNLLLP
LLVKITGETKNASEGSFQNSVLSSLGEALTYISKDRFLNHKLPPKFVAGQKTNLPDKLQT
LLNTLCPLLLFRARPVQVSVYHMLHKLMPELPKFDDEDLKSYGDEEEELALSPPAALMSI
LATQELLLENILECIPVGEFAVIQPLSDEFCLVLGYLLTWKLTLAFFKAASSQLRVLYSQ
YLRRTKSLNKLLYHLFRLMPENPVFSGPTSEVPNKDTKTFFTEELRLDVKGTGMLSSQIP
HLACSVYLITLKDLPAMVRLWWNSCEKRVFNVVDKFTSKYVSSVLSSQEIASVQTSTQLF
NGMTVKARSAAREVIATYSVDDIFIELIIQLPSNYPLGSITVESGKRVGVAVQQWRNWML
QLSTYLTHQNGSIMEGLSLWKNNVDKRFEGVEDCMICFSVIHGSNYSLPKKACRTCKKKF
HSACLYKWFSSSNKSTCPLCRETFL
NT seq
5298 nt
NT seq
+upstream
nt +downstream
nt
atggggggcaagaacaagcagcgaaccaagggcaacctgcggccttctagcagtggccga
gctgcagagctccttgccaaagaacgtggaacagtgcctgggtttatcggctttgggaca
tctcagagtgatctaggatatgttcctgcaattcaaggagcagaagaagtagacagcctt
gtggatgctgatttccgaatggtattgcgaaaactttctaaaagggatgtcacaaccaag
ttaaaagctatgcaagagtttgggacaatgtgcaaggaaagagaagcggaagttgttaaa
ggtgttcttccttattggccaagaatttattgtaaaatttcactggatcatgatcgccgt
gttcgagaagcaactcagcaatcttttgagcaactgattcttaaagtcaaaaaacactta
gctccttacttaaaaagtatcatgggttactggctgattgctcagtgtgacacttactcc
cctgctgcttctgctgcaaaagtagcttttgaaaaagcttttcctttgagcaaacaacct
gaagccttagtattctgtaaggatgaaattcttaatgtacttcaagatcaccttctgaag
gaaacagctgatacacttagtgaccctcaaactgtaccagaagaagaaagggaagccaaa
tttttccggattctgacgtgttccttgttagctttaaaaaagttgctcagcacgttgcca
aagaaagagatgcattcattggaggaaaagttaatgtcacttctgtcccaaaacaaattt
tggaaatatagcaaaaacaatgtatcacaggttcgctcagctttctttgagctgatttct
gctttttgccagcacttgcctgaggtggtgaaagctgaagcaccaagagtttgtcctgct
gttcttctcagcattgatgacagtgatgcagtggtgtgtcctgctctttgggaagcagtg
ctttatactatcaccactattgaggactgttggagtcatgtaaatgccagaaaaggagtt
ctgccaaagctctggacagtgcttcgagaaggtgggcgaggattagctactgttatctac
ccaaacctcctgcccttcattagcaaggtgcctcctgacgttgtggaaccaaagctggaa
tacttcagagtttttttcagctctataattcaagggttgtcaaatgagaggacaatagcc
agtccttcagaaagttcagcaattataactgcatttatggagtgtctgtgctttgctgta
ctacagaaaggagaagaccaaagccaaattcatcaaatgcttatatgtgaccagttgatt
ccttttgtcagtgctgtacttaaagaccccaagttacaaagtggaccattgttttatcaa
acagctgaaatgctgagttcctgggaagctaaagcagaactctccaatgatgatggcaca
gatgaagttttccagaaactgttgtcagatttttggggccatcttttaaaaatgtgtata
cttcatgttgataggttggatgctgacaggaaattactgtttgccatatctggtatgcta
gaaattcttcataatccgaagagtgctatgaaaccaagcaatagaaaatctctaaaaatc
agatttacagatgaggatgaatttgaaaggaacactgagagtcgaaagttcatggaaatt
agaaatggtgactctgaaattcaggctgacttgcagcaaacgtcacatctaaggaaagaa
cctctagagaacttagtctgcaacctggctgagctgagcattgtgtatgtcaatgaacag
aagtcagaacagcatttgaactttctctctgcccttctcaacactttttcctcaaacaga
gttttccaagtacttttagagcagggaaataatgtaagtcctgctcaagctgaatcccaa
aatgaagtaaaagctcataaccgaagtccatctgtacaatttctgtatctgaatttaata
acctggctgaaagaagactggagaaaagacacccatttcctggttgatattttatacagt
gtacttcattgttgcaacaataatgatgaaaggaaagtcattctggatgatttagtaaag
atggatcttaagtgggttatttttctccagataattcaaaaggcatgctcaggcacaacg
aaactttccttagtctctgactggctgaaaggagacacgcttggagaaagactggtaatg
ctggcggatgatctgtgtcacctgggcttaaaacctagagcagcctcatcaggatcagcc
tcttcagaaaggtggacccttctgagcttggtgttgtcacagcacgttaaaagtgaatca
ttgattggtgaaacctttgttgaaaggattattgataaacttcaagcagctctgtctaaa
gcgaaggatctttctgaagctggagatactgaaccatcagtatctttgatctgcgatgtg
gcctcaagctttttcagctctgtgaaaggctgtttgctgatgccatcctcagaagacttg
ctccttaccatcttccagctgtgtgctcagaggcaggatgcaacacacttgtcagatgta
cttgtatgcaagttaaaacacacttggatgtctggtgtaaattcacttgtgcatcagctt
cagggcactcagagcaactttttgtttaaagctgcactgtgggtcaagaaccaagttcag
tcttcctctttggatgttaaaaggcttcaggttttgatctctgcagtcagtgatttgctg
ttgaagctcatggaagctgatggacagtctggatgtcttgtgagagcttatgttgagcat
gtgacaccaaacaaaattgagtgggggaaattgcacgaatctctgtgctctgagtggatg
cacaagcctcttttggaaggaaggcttagtatgaattgtgaacctctgggatcaagtgtc
aagctgtgtggcacaactaaacttccaggccatctgtgtacttcagccttattaagtaaa
atagtactacttcagctgaaaaatcatgtagtccatggagatcatgattctgaaagaaag
aaaattgataatataattgcggaactgttatattcgctacaatggattgaagaattggag
aatcctccttatctgcttctggaatatcttcatatgttagaagagatggacatcacatat
gaggagtttagtactctgagtagtacagctaacctgcagcaaactatatttgtcagatca
gaggaacatggaagactctggtccttaaccatggccaaagtgatccgcgctgagaatgct
gtatcctgggagaggaaagaacttttcaagacaacagaagggttccttccattaacagag
ggcagattgcatacacttcagtgtttatcatctttcttaactgaggaagaaaagagggaa
cttgtcttccattgtgtggccaaacttatgacatgtacacagacagagctttccagcact
gacggagcatttgggtgtctttccattttgaactcctgcttgaaggatagaagtattgat
tgtgatcatctattacctgcagtactgaaaatcataatatcttggaaaaatgataatgag
gacagctttctctttagctgcagtctgaaagaagcaagtgctcaattgcttggtttcaac
attgagttgatgcgttaccttcccttgttgctgaaatattctgcagctcctttggctgat
aatgagtgggacttcttgatgtgctccatgctggcttggttagagacaacaagtgaaagc
cgtttgctttaccatatcccgcttgtgcagatttttgcttgtgtcagttgtgacttggca
tctgcccttagcacttactttgaggctgcagctccttacagcactgcaaatcttcctaag
aacttggtcagtgaatggaaggaattcttttctgagggaattcacaatttgctgttaccc
ttgttggtgaaaatcacaggagaaaccaaaaatgcatcagaaggctcttttcagaactct
gtattatcatctttgggtgaagctctaacttacatctcaaaggaccggttcttaaaccat
aagctgccaccgaagtttgttgcaggccagaagacaaatcttccagataaactccagact
ctactgaacacactctgtccgttattgcttttccgggctcgacctgtacaggtttctgtc
taccatatgctgcataaattaatgcctgaattgcctaaatttgatgatgaagatctcaag
tcctatggtgatgaagaggaggaattggcattatcacctccagcagctcttatgtccatc
ctggccactcaagaactcttgctagaaaacatcctggaatgcattccggttggagaattt
gcagttattcaacccctgagtgatgagttctgccttgttctaggatatcttctcacttgg
aagttgacattagctttctttaaagcagcttcttctcagctacgtgttctctactcacaa
taccttagaagaactaaaagcttgaataaactgctttatcacttgttcaggcttatgcct
gaaaaccctgtcttttctgggccaacttcagaagttccaaataaggacacaaaaaccttc
tttactgaagagcttcgtttagatgtcaaagggacagggatgctgtcatcccagatccca
cacttggcctgctctgtgtaccttataactctgaaagatctgccagccatggtgaggctg
tggtggaatagctgtgagaagcgtgtcttcaatgttgtggataaattcacaagcaaatat
gtcagcagtgtgctctcctcccaggaaatagcttctgttcagactagcacacagttattt
aatggcatgacagtaaaagctcggtctgcagcacgagaagtcattgcaacctattctgtt
gatgatatctttattgaactaataatacagcttccatcaaattatccactgggatccata
acagttgagagtggaaagagggttggtgtagctgtacagcagtggcgcaattggatgcta
cagttaagcacatatcttacacatcagaatggaagtattatggaaggcttatctttgtgg
aaaaataatgtggataaacgttttgaaggcgttgaagattgcatgatctgtttttcagtc
attcatggttcaaactattctcttcccaaaaaagcttgcagaacgtgcaagaagaagttt
cattcagcttgcttgtacaaatggttctcatccagcaacaaatccacatgtccactctgt
cgagagacattcttgtga
DBGET
integrated database retrieval system
