Molothrus ater (brown-headed cowbird): 118684603
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Entry
118684603 CDS
T11569
Symbol
EIF4A3
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
mate Molothrus ater (brown-headed cowbird)
Pathway
mate03013
Nucleocytoplasmic transport
mate03015
mRNA surveillance pathway
mate03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118684603 (EIF4A3)
09122 Translation
03013 Nucleocytoplasmic transport
118684603 (EIF4A3)
03015 mRNA surveillance pathway
118684603 (EIF4A3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mate03019
]
118684603 (EIF4A3)
03041 Spliceosome [BR:
mate03041
]
118684603 (EIF4A3)
03009 Ribosome biogenesis [BR:
mate03009
]
118684603 (EIF4A3)
03012 Translation factors [BR:
mate03012
]
118684603 (EIF4A3)
Enzymes [BR:
mate01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118684603 (EIF4A3)
Messenger RNA biogenesis [BR:
mate03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118684603 (EIF4A3)
mRNA cycle factors
Stress granule specific factors
118684603 (EIF4A3)
Spliceosome [BR:
mate03041
]
Complex C
Other components
EJC/TREX
118684603 (EIF4A3)
Ribosome biogenesis [BR:
mate03009
]
Eukaryotic type
90S particles
Helicases
118684603 (EIF4A3)
Translation factors [BR:
mate03012
]
Eukaryotic type
Initiation factors
eIF-4
118684603 (EIF4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
TniB
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
118684603
NCBI-ProteinID:
XP_036235455
LinkDB
All DBs
Position
3:17079822..17086450
Genome browser
AA seq
410 aa
AA seq
DB search
MAGSAGSAGGSARKRLMKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKP
SAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQ
IQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAI
KMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV
KRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREAN
FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELY
IHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggcggggtccgcgggatccgcgggcggctcggcgcggaagcgcctcatgaaggaggag
gacatgaccaaggtggagttcgagaccagcgaggaggtggacgtgacgcccaccttcgac
accatgggcctgcgggaggacctgctgcgtggcatctacgcctacgggttcgagaagccg
tcggccatccagcagcgagccatcaagcagatcatcaagggcagagacgtgatcgcccag
tcacagtcgggaacagggaagacagcaacattctccatatctgttctacaatgcctggat
atacaggtccgtgagacccaagccttgatcctggcaccgactcgggagctggctgtgcag
atccagaagggccttctcgccctgggagactacatgaatgtgcagtgccacgcctgcatc
gggggcaccaacgtgggcgaggacatccgcaaactggattatgggcagcatgtggtggct
ggcactcctggccgggtgttcgatatgattcgtcgcagaagtctgagaactcgtgccatc
aaaatgctggttttggatgaagcagatgaaatgctcaataaaggcttcaaggagcagatt
tatgatgtgtacagatacctgcctccagccacacaggttgttctgatcagcgccactttg
ccgcatgaaatcttggaaatgaccaacaagttcatgacagaccccatccgcatcctggtg
aaacgtgatgagttgaccctcgaaggaatcaagcagtttttcgtggctgtggagagggaa
gagtggaagtttgataccttgtgtgatctctacgacacgctgaccatcacccaggctgtc
atcttctgtaacaccaagagaaaggtcgactggctcacagagaagatgagggaagccaac
ttcaccgtttcctccatgcatggggacatgccccagaaggagagagagtccatcatgaaa
gagttcagatctggtgcaagccgagttcttatttccacagacgtgtgggctcgaggcctg
gatgtgcctcaggtgtcgctgatcattaactacgacctgcccaacaacagagagctctac
atccacagaatcggccgctcaggcaggtacggccggaaaggcgtcgccatcaactttgtg
aagaacgacgacatccgcatcctgcgggacatcgagcagtactactccacccagatcgac
gagatgcccatgaacgttgctgatctgatatga
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