Molothrus ater (brown-headed cowbird): 118686532
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Entry
118686532 CDS
T11569
Symbol
VPS16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
mate Molothrus ater (brown-headed cowbird)
Pathway
mate04140
Autophagy - animal
mate04148
Efferocytosis
mate05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118686532 (VPS16)
04148 Efferocytosis
118686532 (VPS16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
118686532 (VPS16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mate04131
]
118686532 (VPS16)
Membrane trafficking [BR:
mate04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
118686532 (VPS16)
Hops complex
118686532 (VPS16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
118686532
NCBI-ProteinID:
XP_036238683
LinkDB
All DBs
Position
4:complement(71060832..71084206)
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AA seq
839 aa
AA seq
DB search
MDCYTANWNPLGEETFYRKLELYSMEWGLREDLRDCVVAAAPYGGPIALLRNSRRDKTPS
ARPLLEIYSASGLLLASVPWKSGHLVHLGWTAGEDLLCIQEDGTVLVYNLFCEFKRHFSM
GNEVLQNHVLEAQVFHTEFGTGVAILTGALRFSLATNIDDLKLRRLPEVPGLQKAPPCWT
VLAQDRVTMVLLAMGQELFLLDNTSCSVLVRRPPGLSPSAGPFLHVAVSFTHRLLALFCD
SGSVWMGTASLKEKFCEFNTGIRSPPKQMVWCTRPRSRQRAVVLAWERQLMVVGNSSECI
RFVLDEDSYLVPELDGVRILSRSTHEFLHEIPEASQEIFRIASMAPGALLLEAQKEYEKE
SQKADEYLREIREQQLLPEAVGQCIEAAGYEHEPETQKSLLRAASFGKCFLDKFPPEGFV
RMCQDLRVLNAIRDYQIGIPLTFTQYKQLTIEVLLDRLVLRRLYPLAIRICEFLRLPEMQ
GVSRILAHWACYKVQQKDKSDEEVAQAINQKLGDTAGISYSDIATRAYDCGRAELAIKLL
EYEPRSGEQVPLLLKMKRSKLALGKAIESGDTDLVYTVVLHLKNELNRGSFFMTLQNQPV
ALSLYRQFCRHQERETLKDLYNQDDNHQELGNLHVLGGYCQKRIEGRVAALQNALDEFYK
AKNDFAAKATEEQIKLLRLQRHLQEELDKPYLDLSLHDTVATLILDGHHKRAEQLYRDFR
IPDKRYWWLKINALATRGDWEEMEKFSKSKKSPIGYLPFVEVAVKHHNRYEAKKYAPRVP
PEQRVKAFVLVGDLEQAAEAAMERKNEAEMSLVLSRCSPGTDGALAERLNRARAQLLKK
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggattgttacacggccaactggaacccgctgggcgaggagaccttctatcggaagctg
gagctctactccatggaatgggggctgcgggaggatctccgtgactgtgtggtggcagct
gccccatatgggggtcccatagctctgctgaggaattcccggcgggacaagacccccagc
gcccgcccgctcctggagatctactcggcctcggggctgctcctggccagtgtcccgtgg
aagagcggccacctggtgcacctgggctggacggcgggggaggacctgctgtgcatccag
gaggatgggaccgtcctggtctacaacctgttctgcgagttcaaacggcacttcagcatg
ggaaacgaggtgctgcagaaccacgtgctggaggcgcaggttttccacacggagttcggg
acgggcgtggccatcctgacgggagcgctgcgcttctccctcgccaccaacatcgacgac
ctcaagctgcgccgcctgcccgaggtccccgggctgcagaaggccccgccgtgctggacc
gtgctggcccaggacagggtgaccatggtgctgctggccatgggacaggagctcttcctg
ctggacaacacctcctgctccgtgctggtgagacgcccccccgggctgagcccctcggcg
gggccgttcctgcacgtggccgtgtccttcacccaccggctcctggcgctcttctgcgac
tccggctccgtctggatgggaacggcctcgctcaaggagaagttctgcgagttcaacacc
ggcatccgatccccgcccaagcagatggtttggtgcacgcggccccgcagccggcagcgc
gccgtggtgctggcctgggagcggcagctgatggtggtggggaactcctccgagtgcatc
cgctttgtcctggatgaggattcctacctggtgcccgagctggacggggtcaggatcctg
tcccgcagcacccacgagttcctgcacgagatcccagaggccagccaggagattttccgc
atcgcctccatggccccgggcgctctgctgctggaggcacagaaggagtacgagaaggag
agccagaaggccgacgagtacctgcgggagatccgcgagcagcagctgctccccgaggcc
gtgggccagtgcatcgaggccgcgggctacgagcacgagcctgaaacccagaaatccctg
ctgagggcagcttcctttgggaagtgtttcctggataagttcccgcctgaggggttcgtg
cgcatgtgccaggacctgcgggtcctcaacgccatcagggactaccagattgggatcccg
ctcaccttcacccaatacaagcagctcaccatcgaggtgctgctggacaggctggtcctg
cgccgcctgtaccccctggccatccgcatctgcgagttcctgcgcctgccggagatgcag
ggcgtcagccgcatcctggcgcactgggcctgctacaaggtgcagcagaaggacaagtcg
gacgaggaggtggcccaggccatcaaccagaagctcggggacaccgcgggcatctcctac
tcggacatcgccacgcgcgcctacgactgcggccgcgccgagctggccatcaagctgctg
gagtacgagccccggagcggggagcaggtgccgctgctgctgaagatgaaacggagcaaa
ctggccctgggcaaagccatcgagagcggcgacaccgacctggtgtacacggtggtgctg
cacctcaagaacgagctcaaccgcggctccttcttcatgaccctgcagaaccagcccgtg
gccctgagcctgtaccgccagttctgccggcaccaggagcgggagacgctgaaggatttg
tacaaccaggacgacaaccaccaggagctgggcaacctgcacgtgctggggggctactgc
cagaagcggatcgagggccgcgtggccgccctgcagaacgccctggacgagttctacaag
gccaagaatgactttgctgccaaggccacagaggagcagatcaagctgctgcggctgcag
cggcacctgcaggaggagctggacaagccctacctggacctgtccctgcacgacaccgtg
gccaccctcatcctggacgggcaccacaagcgcgccgagcagctctaccgggacttcagg
atcccggacaagaggtactggtggctgaagatcaacgccctggccacccgcggggactgg
gaggagatggagaagttctccaagagcaagaagtcgcccattgggtacctgcccttcgtg
gaggtggcagtgaagcaccacaaccgctacgaggccaagaaatacgcaccgcgtgtgccg
cccgagcagcgcgtcaaggccttcgtcctcgtgggggacctggagcaggcggccgaggcg
gccatggagcgcaagaacgaggccgagatgagcctggtgctgtcccggtgctcccccggc
accgacggcgccctggctgagaggctcaaccgggcccgggcacagctcctcaaaaagtga
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