Molothrus ater (brown-headed cowbird): 118687239
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Entry
118687239 CDS
T11569
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
mate Molothrus ater (brown-headed cowbird)
Pathway
mate03420
Nucleotide excision repair
mate04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
118687239 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
118687239 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mate04121
]
118687239 (DDB1)
03400 DNA repair and recombination proteins [BR:
mate03400
]
118687239 (DDB1)
Ubiquitin system [BR:
mate04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
118687239 (DDB1)
DNA repair and recombination proteins [BR:
mate03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
118687239 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
118687239 (DDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
118687239
NCBI-ProteinID:
XP_036239998
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All DBs
Position
6:complement(9056045..9067898)
Genome browser
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
TAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPHRE
TDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKSLVSEWKEPNGKNISVASCNSNQVVVAVGRALYYLEIRPQELRQISCTEMEHEVAC
LDITPLGDSNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgtggtgacggcgcagaagccgacggccgtcaatggctgcgtcacc
ggacacttcacctctgcggaggacctgaacctgctgattgccaaaaacacccggctggag
atttacgttgtgacggccgaggggctccggcccgtcaaggaagtggggatgtacgggaaa
accgccgtcatggagctcttccgccccaagggggagagcaaggatttgctgttcatcctg
acggccaagtacaatgcctgcatcctggaatacaagcagaacggggatagcattgacatc
atcacccgtgcccatggaaacgtgcaggatcgcattgggcggccctcggagaccgggatc
atcgggatcatcgatcctgagtgccggatgatcgggctgcgcctctacgacggcctcttc
aaggtcatccctctggatcgggacaacaaggagttaaaggccttcaacatccgcctggaa
gagctccaggtcatcgatgtgaaattcctttacggctgccaagctcccaccatctgcttc
gtctaccaggaccctcagggccgccacgtgaagacatatgaggtgtccctgcgggagaag
gaattcaacaaaggcccttggaagcaggaaaacgtggaggccgaagcctccatggtcatt
gcagtgccggagcccttcggaggcgccattatcattgggcaggaatccatcacctaccac
aatggggataaatatctggctatcgctcctcccatcatcaagcaaagcaccatcgtgtgc
cacaaccgcgtggatcccaacggatcgcggtatttgctgggagacatggaagggaggctc
ttcatgctgctcctggaaaaggaggagcagatggacggcactgtcaccttgaaggatctg
cgtgtggagctgctgggagagacatccattgctgagtgcctgacctacctggataacgga
gtggtgtttgttggctccaggcttggagattcccagctcgtgaagctcaacgtggacagc
aacgagcagggatcctacgtggtggccatggagaccttcaccaacctcgggcccatcgtg
gacatgtgcgtggtggacctggagaggcaaggccaaggccagctggtcacctgctccggg
gccttcaaagagggatcgctgcggatcatccgtaacggcatcgggatccatgagcatgcc
agcatcgacctgccgggaattaaaggattgtggccactgaggtcggatccacaccgggag
acagacaacaccttggtgctgtcatttgttggccagaccagggttctgatgttgaacgga
gaggaagtggaagagacagagctcacgggatttgtggatgaccagcagaccttcttctgt
ggcaatgtggcacatcagcagctgatccagatcacgtctgcctcggtgcgactggtcagc
caggagcccaaatccctggtgagtgagtggaaagagcccaatgggaagaacatcagcgtc
gcttcctgcaacagcaaccaggtggtggtggccgtgggaagagccttgtactacctggaa
atccggcctcaggagctgcggcagatcagctgcacggagatggagcacgaggtggcctgc
ctggacatcacccccctgggagactccaacgggatgtccccgctctgtgccatcgggctc
tggaccgacatctctgcccgcatcctgaagctcccgtccttcgagctgctgcacaaggag
atgctgggaggagagattatccctcgctccatcctgatgacgaccttcgagagcagccac
tacctcctgtgtgccctgggggacggagctctcttctacttcggcctcagccttgagaca
ggcttgctgagtgacaggaagaaggtgaccctgggcacgcagcccacggtgctgaggaca
ttccgctccttgtccaccaccaacgtgtttgcctgctccgaccgccccaccgtcatctac
agcagcaaccacaagctggtcttctccaacgtcaacctcaaggaggtcaactacatgtgc
cccctcaattccgacggataccccgacagtttggccttggccaacaacagcaccctgacc
attggcaccatcgatgagatccagaagctgcacatccgcactgttcccctctatgagtcg
cccaggaaaatctgctaccaggaggtatcccagtgctttggggtgctctccagccggatt
gaggtgcaggatgccagtgggggcaccacagcgctcagacccagtgccagcacccaggcc
ttgtccagcagtgtgagcaccagcaagctgttttccagcagcacagctccgcacgagaca
tccttcggagaggaggtggaagtgcacaacctgctcatcatagaccagcacacctttgaa
gtgctccatgctcaccaattcctgcaaaatgagtacgccctcagcctggtctcctgcaag
ctgggaaaggatcccaacacctacttcattgtgggcactgccatggtgtatcccgaggaa
gcggagcccaagcagggccggattgttgtcttccactactccgatgggaagctgcagagc
ctggctgagaaggaggtcaagggagctgtgtattccatggtggaattcaacgggaagctg
ttagccagcatcaacagcacggtccgcctgtacgagtggacagcggagaaggaattgcgc
acggagtgcaaccactacaacaacatcatggccctgtacctgaaaaccaagggggatttc
atcctggtgggagacctcatgcgctccgtgctgctcctggcctacaaacccatggaaggg
aatttcgaggagattgcccgggatttcaatccaaactggatgagtgccgtggagatcctg
gatgatgataatttcttgggagcggagaatgctttcaatctgttcgtgtgccagaaggac
agtgcggccacgacggacgaggagcggcagcacctgcaggaagtgggattatcccacctg
ggagagttcgtcaatgtcttctgccacggatccctggtcatgcagaacttgggagagact
tccacacccacccagggatccgtgctctttggcactgtcaatggaatgattggcctggtg
acatccctgtcggaaagctggtacaacctgctcctggacatgcagaacaggctcaacaaa
gtcatcaagagcgtggggaagattgagcattccttctggagatcgttccacactgaacgg
aagacggagccagccacaggattcattgatggagacttgattgagagtttcctggacatc
agcaggcccaagatgcaggaagtggtggcaaacctgcagatcgacgacggaagcgggatg
aagagggaagccaccgtggatgacctgatcaagatcgtagaggagctgacccggatccat
tag
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integrated database retrieval system
