Molothrus ater (brown-headed cowbird): 118687643
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Entry
118687643 CDS
T11569
Symbol
PRPF19
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
mate Molothrus ater (brown-headed cowbird)
Pathway
mate03040
Spliceosome
mate04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118687643 (PRPF19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
118687643 (PRPF19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mate03041
]
118687643 (PRPF19)
04121 Ubiquitin system [BR:
mate04121
]
118687643 (PRPF19)
03400 DNA repair and recombination proteins [BR:
mate03400
]
118687643 (PRPF19)
Enzymes [BR:
mate01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118687643 (PRPF19)
Spliceosome [BR:
mate03041
]
Complex B
Other components
Prp19 complex
118687643 (PRPF19)
Complex C
Prp19-CDC5 complex
118687643 (PRPF19)
Ubiquitin system [BR:
mate04121
]
Ubiquitin ligases (E3)
U-box type E3
118687643 (PRPF19)
DNA repair and recombination proteins [BR:
mate03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
118687643 (PRPF19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_WDHD1_1st
Prp19
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_WDR3_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_Aladin
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_HPS5
Beta-prop_WDR41
U-box
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_DCAF4
PEP5_VPS11_N
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_Nup120_160
PROPPIN
Beta-prop_ACSF4
Beta-prop_VPS8
Cytochrom_D1
RMC1_N
Beta-prop_DCAF12
zf-Nse
Beta-prop_WDR35_TULP_N
DUF1830
ATG16
GP3
Cep57_MT_bd
Motif
Other DBs
NCBI-GeneID:
118687643
NCBI-ProteinID:
XP_036240621
LinkDB
All DBs
Position
6:complement(9013571..9017609)
Genome browser
AA seq
504 aa
AA seq
DB search
MALICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPVNNQPLSEEQLIDIKVAHP
IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLIVPQAVPSAQPNVAGAGEAMDLGELAGMTPEIIQKLQDKA
TVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG
GADKNVIVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQ
VVRAHEGSVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDESSGCALTCAQFHP
DGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD
LRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTG
VAFGHHAKFIASTGMDRSLKFYSL
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcatctgctccatttccaacgaggtcccggagcacccatgtgtgtcgccggtg
tccaaccacgtgtacgagcggcggctgatcgagaaatacatcgcggagaacggcaccgac
cctgtcaacaaccagccgctgtccgaggagcagctcatcgacatcaaagtcgcccacccg
atccggcccaagcccccctcggccaccagcatcccggccatcctgaaagccctgcaggac
gagtgggatgccgtgatgctgcacagcttcactctgcggcagcagctgcagaccacgcgc
caggagctgtcccacgccctgtaccagcacgacgccgcctgcagggtcatcgcccgcctc
accaaggaggtcactgccgccagagaagctctggccacgctgaagcctcaggccgggctc
atcgtgccccaggcggtgccgtcagcgcagcccaacgtggccggcgctggcgaggccatg
gatctgggagagctggcaggaatgaccccagagatcatccagaagctccaagacaaggcc
acagtgctgaccacggagcgtaagaagaggggcaagacagtcccagaggagctggtgaag
ccagaggagctcagcaagtaccggcaggtggcctcgcatgtggggctgcacagtgccagc
atcccaggaattcttgccttagatctgtgtccttccgacaccaacaagatcctcactggt
ggagccgacaaaaacgtcatcgtgttcgacaagagctcggagcagatcctggccacgctc
aagggccacaccaagaaagtcaccagcgtcgtcttccacccatcccaggacttggtgttc
tcggcttctcccgacgccacgatccggatctggtccgttcccaacgcctcctgtgtccag
gtggtccgtgcccacgagggctccgtgaccgggctcagcctccacgccacgggtgattac
ctgctcagctcctcggatgatcagtactgggctttctcggatatccagaccggccgcgtc
ctcaccaaggtgacggatgagagctctggatgtgctctcacctgtgcccagttccacccg
gacgggctcatttttgggacgggaacgatggattcccaaatcaagatctgggatctgaag
gaacgcaccaacgtggccaacttcccgggacactcgggccccatcaccagcatcgccttc
tccgagaacggatactacctggccacggcagccgacgactcctccgtcaagctctgggat
ttgaggaagctcaagaacttcaagacgttgcagctggataacaacttcgaggtgaaatcc
ctgattttcgaccagagcgggacctacctggcactgggcgggactgatgtccagatctac
atctgcaagcagtggacagagatcctccacttcacagagcacagtggtctgaccacagga
gtggcctttggccaccatgccaagttcatcgcttccacaggcatggatcggagcctcaag
ttctacagcctgtag
DBGET
integrated database retrieval system
