Molothrus ater (brown-headed cowbird): 118688692
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Entry
118688692 CDS
T11569
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 1 subunit alpha-like
KO
K04833
voltage-gated sodium channel type I alpha
Organism
mate Molothrus ater (brown-headed cowbird)
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mate04040
]
118688692
Ion channels [BR:
mate04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
118688692
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
SieB
FraC
Lustrin_cystein
New_glue
ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
118688692
NCBI-ProteinID:
XP_036242318
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All DBs
Position
7:19788285..19840502
Genome browser
AA seq
1882 aa
AA seq
DB search
MLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCLEDFTFLRDPWN
WLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVM
ILTVFCLSVFALIGLQLFMGNLRNKCLQWPPENFTLETNITSQLNSTIGENGTLLNSTVT
PFDWKGYIEDESHFYFLEGQNDALLCGNSSDAGQCPEGYTCVKAGRNPNYGYTSFDTFSW
AFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAYEEQN
QATLEEAEQKEAEFQQMLEQLKKQQEAAQAAAVAAAAVTASAESREPSAGGEAGGLSESS
SDASKLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFHKSESEDSIRRKGFRLSIEGNRL
TYEKKYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFEDNDS
RRDSLFVPRRHGERRNSNISQASRSSRMLAVFPVNGKMHSTVDCNGVVSLVGGPSVPTSP
VGQLLPEVIIDKPATDDNGTTTEPEMRKRISGSFHVSMDFLEDPALRERAMSIASILTNT
VEELEESRQKCPPCWYKFANIFLIWDCSPHWLKVKHIVNLVVMDPFVDLAITICIVLNTL
FMAMEHYPMTEEFNNVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVTLS
LVELGLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFI
FAVVGMQLFGKNYKECVCKIASDCVLPRWHMQDFFHSFLIVFRVLCGEWIETMWDCMEVA
GQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAVTDDDNEMNNLQIAVARMQKGI
DYVKRKAREFIQKAFVKKQKALDEIKPLEDLNNKNSCISNHTTVELSKDHDYIKDANGTT
SGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEFSSESDLEESKE
KLNSSSSSEGSTVDIGLPAEEQPEAEPEEAQEPEACFTEGCVRRFKCCQVSIEEGRGKQW
WNLRKTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIFI
LEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPL
RALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYYCVNTTTDER
FEVDQINNFSQCEELIKNNQSARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYAAIDS
RDVLDQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQ
KKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTQQVFDISIMILICLNMVTMMVETDD
QSEEMENILYWINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMFLAEM
IEKYFVSPTLFRVIRLARIGRILRLIKGAXGIRTLLFALMMSLPALFNIGLLLFLVMFIY
AIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGEPDCDPN
KAHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFGVATEESAEPLSEDD
FEMFYEVWEKFDPDATQFMEFEKLSDFAAALEPPLHLPKPNKVQLIAMDLPMVSGDRIHC
LDILFAFTKRVLGESGEMDALRIQMEDRFMASNPSKASYEPITTTLKRKQEEVSAVIIQR
AYRRHLLKRTVKQASFIYNKNKTEGGAGQGMKDEILIDKLNENSFTEKTDITASTAVCPP
SYDRVMRPVKEKHEKEDKDGQK
NT seq
5646 nt
NT seq
+upstream
nt +downstream
nt
atgctcatcatgtgcactattttgaccaactgcgtatttatgaccatgagtaaccctcca
gactggacaaagaatgtagagtatactttcactggcatttacacatttgagtcactaata
aaaatcattgcaaggggtttttgcttagaagattttacttttcttcgagatccgtggaac
tggcttgatttcactgtcattacctttgcatatgtgacagagtttgtggacctgggcaat
gtctcagcgttgagaacattcagagttctccgagctttgaaaacaatatcagtcattcca
ggcctgaagactattgtaggagccctgattcagtctgtgaagaagctctcagatgtcatg
atcctgactgtgttttgtctgagtgtatttgcactgatagggctgcagctgttcatgggc
aacctgaggaataaatgcctgcagtggcctccagaaaattttactttggaaacaaatatt
acttcccagctaaacagcaccataggtgaaaatggtacattgcttaattcaacagtgact
ccatttgactggaaggggtacattgaagatgaaagtcatttttattttctggaagggcaa
aatgatgctctgctttgtggaaatagctctgatgctgggcagtgcccagaaggatatact
tgcgtgaaagctggcagaaatcccaattatggctacacaagttttgacacattcagctgg
gctttcttgtcactgtttcggctaatgactcaggacttctgggagaacctttatcaattg
actcttcgtgctgctgggaagacatacatgatattttttgttctggtgatttttctgggc
tctttctatctgataaacctgatcctggctgtggttgccatggcctatgaagaacagaac
caagcaaccttggaagaagcagagcagaaggaggcagaatttcaacagatgctggaacaa
ctgaagaagcaacaagaagcagcacaggcagcagcggtggcagcagcagcagtaacagca
tctgcagagtccagggagcccagtgctggaggagaagcaggaggcctctcagaaagctcc
tcagacgcgtcaaaattgagttcaaagagtgcaaaagagaggagaaatagaaggaaaaaa
aggaaacagaaagagcagtctggaggagaggaaaaagatgaagatgaatttcacaagtct
gaatcagaagacagcatcagaaggaaaggtttccgattgtctattgaaggcaatagactg
acatatgaaaagaaatattcttctccacatcagtctttgctgagcattcgtggctcactg
ttttccccaaggcgcaacagcagaacaagtctattcagcttcagaggtcgagcaaaggat
gtaggatcagaaaatgactttgctgatgatgagcacagcacttttgaagacaacgacagc
agaagagattcgctctttgtgccacgcaggcacggagaaaggcgcaacagcaacatcagc
caggccagtaggtcatccaggatgctggcagtgtttccagtgaatgggaagatgcacagc
accgtggattgcaatggggtggtttccctggttggtggaccatctgttcctacatcgcct
gttggacagcttctgccagaggtgataatagataagccagctactgatgacaatggcacc
acgacagaaccagaaatgaggaagagaatatcaggttcttttcacgtttctatggacttc
ttggaagatccagctttaagggaaagagccatgagtattgctagcatcctcacaaacact
gtggaagaacttgaagaatcgagacagaaatgcccaccatgttggtataaatttgcaaat
attttcttgatctgggactgcagtccgcattggttaaaagttaagcatatcgtcaactta
gtggtaatggacccatttgttgacctggctattacaatttgcattgttttaaatacactc
tttatggctatggaacattatccaatgaccgaagaattcaataatgtactttcagttgga
aatctggtcttcactggaatcttcacagcagaaatgtttctcaagataattgcaatggat
ccttactattatttccaggaaggctggaatatttttgatggctttattgtaacccttagc
ttggttgaacttggtcttgctgatgtggaaggactatctgttcttcggtcattcagattg
ttgcgagttttcaaattggcaaaatcctggccaacactaaatatgttgataaaaatcatt
ggtaattccgtgggagctctggggaatctgaccctggtgctggccatcattgtgttcatt
ttcgctgtggttgggatgcagctctttgggaaaaactacaaggaatgcgtctgcaaaatt
gcaagtgactgtgtgctccctcgctggcacatgcaagatttcttccactctttcctgatt
gtattccgagtgctgtgtggagaatggatagaaaccatgtgggactgcatggaggttgca
ggccaagccatgtgccttacagtcttcatgatggtcatggtgattggaaacctagtggta
ctgaacctatttttggccttgctcttgagctcatttagtgcagacaaccttgctgtgaca
gacgatgataatgaaatgaacaatctccagattgctgtggcaagaatgcagaaaggcata
gattatgtgaagagaaaagcacgtgaattcatccaaaaagcctttgttaaaaaacagaaa
gctttagatgaaatcaagccacttgaagatttaaacaacaaaaatagctgtatttctaac
catacgaccgtggaactaagcaaggaccatgactatattaaagatgcaaatggaaccacc
agtggtataggcacaggcagcagtgtggaaaaatacataattgatgagagtgattacatg
tcattcataaacaacccaagccttactgtgacagtgcccattgctgtgggtgaatccgac
tttgaaaatctaaacacagaagaatttagtagtgaatcagacctggaagaaagcaaagag
aagttaaattcatccagttcatctgaaggcagcacagttgatattggacttcctgcagaa
gaacaaccagaagctgaacctgaagaagcccaggagccagaggcctgcttcacagaaggc
tgtgtaagaaggttcaaatgctgtcaagtaagtatagaagaagggagaggaaaacagtgg
tggaaccttagaaaaacctgcttcagaatcgttgaacacaactggtttgagactttcatt
gtctttatgattctcctcagtagtggagctctggcttttgaagacatatatattgaacaa
cgtaaaactatcaagaccatgctggaatatgctgacaaggtcttcacttacatcttcatt
ctggaaatgctgctgaagtgggtggcctatggctatcaaacatattttactaatgcctgg
tgctggctggacttcctgattgtcgatgtctctttggttagcttaacagcaaatgcattg
ggttactctgaacttggtgccattaagtcccttaggacactaagagctttgagacctcta
agagctttgtcacgatttgaaggcatgagggtggttgtgaatgcccttttaggagcaatt
ccatccatcatgaacgtgcttctcgtttgtcttatattctggctaattttcagcatcatg
ggagtaaatctgtttgctgggaagttctactactgtgttaacaccacaactgatgaaagg
tttgaagtcgaccaaatcaacaattttagtcagtgcgaggaactcataaaaaacaatcaa
agtgcccgatggaaaaacgtgaaagtaaactttgataatgtaggatttgggtatctttct
ttacttcaagtagctacatttaaaggctggatggatattatgtatgcagctattgactca
agagatgtgttagatcaacccaagtatgaagacaacttgtatatgtacttgtattttgtc
atctttataatttttgggtcctttttcaccctgaatttgttcattggtgtcattattgac
aacttcaatcagcaaaaaaagaagtttggaggtcaagacatatttatgacagaagagcag
aagaaatactacaatgcaatgaaaaagctgggatccaaaaaaccacaaaaacctatacca
agaccagggaataaattccaaggaatggtctttgattttgtgacacagcaagtatttgac
atcagcatcatgattcttatttgtcttaacatggttaccatgatggtagaaactgatgac
cagagcgaagaaatggaaaatattttatactggataaacctcgtgttcattgtccttttc
actggagaatgtgttctgaaattaatttcacttcgccattactacttcactataggctgg
aacatttttgattttgtggttgtcattctctctatagtaggaatgtttttggctgagatg
attgagaagtactttgtatctcccacactattcagagtcatccggcttgccaggatcggt
cgaatcctgcgcctcattaaaggcgaaggaatccgcactctgctttttgctttgatgatg
tctcttcctgctttgttcaacattgggctgctgctcttcctggtcatgttcatctatgcc
atatttggcatgtccaactttgcctacgtcaagagggaagctgggattgatgacatgttc
aactttgaaacgtttggcaacagcatgatctgcctgttccagatcaccacgtccgctggc
tgggacggtttgctcgccccaattctcaacagtggggagccagactgtgaccctaacaag
gctcatccagggagctctgtgaaaggtgactgtggcaacccttctgttgggattttcttc
tttgtcagctacattatcatatcctttctggtagtggtgaacatgtacattgctgtgatt
ttggagaacttcggtgttgctacagaagaaagcgctgaacccttgagcgaggatgatttt
gagatgttctatgaagtctgggagaagtttgatcctgatgcaacacaattcatggaattt
gagaaattgtctgattttgcagcagcacttgagcctcctcttcatctacccaaacccaac
aaagtccagctcattgcaatggatctgcccatggtgagcggtgacagaattcactgcctt
gacatcttgtttgctttcacaaagcgtgttttgggggaaagtggggagatggacgccctc
agaatacagatggaagatcggtttatggcatccaatccttctaaagcttcctatgaacca
attacaaccacactgaaacgaaaacaggaggaggtgtctgctgttattattcagcgtgct
tacagacgtcacctcttaaaacgaacagtgaaacaagcttcctttatctataacaaaaat
aaaactgaaggtggggctggtcagggtatgaaagatgaaatccttattgacaagttaaat
gaaaactcatttacagagaaaacagacataaccgcatcaacagcagtttgtccgccttct
tatgatcgtgtaatgaggccagtcaaagaaaagcatgaaaaggaagataaagatggtcag
aaataa
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